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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00002879-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 35373.4 Da PI: 9.5258 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.3 | 2.9e-53 | 55 | 181 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+++yL kkv + ++++ i evd++kvePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgk SMil_00002879-RA_Salv 55 LPPGFRFHPTDEELITHYLSKKVLDPSFSA-VSIGEVDMNKVEPWELPWRAKLGEKEWYFFCIRDKKYPTGLRTNRATAAGYWKATGK 141 79*************************999.56***************888999********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 d+e+l+ +++lvg+kktLvfy+grapkgek++Wv heyrle SMil_00002879-RA_Salv 142 DREILR-GRSLVGMKKTLVFYQGRAPKGEKSNWVAHEYRLE 181 *****9.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-59 | 50 | 202 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.136 | 55 | 202 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-27 | 56 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
LELFGRIPFF SSFFRSKLAK VCFFFFFPNP SKSKSKKKLF GLMMEFKSGD DHIDLPPGFR 60 FHPTDEELIT HYLSKKVLDP SFSAVSIGEV DMNKVEPWEL PWRAKLGEKE WYFFCIRDKK 120 YPTGLRTNRA TAAGYWKATG KDREILRGRS LVGMKKTLVF YQGRAPKGEK SNWVAHEYRL 180 EGEFSPPGSA KNDWVISRVF QKTTGGKKIH ISGMTRVESE TMPPLVDSMK LEPKYEHEHE 240 HVHCFSKAAA AVAPHKDLFN NDPIFPSSSN HVDFSSFTRS QFPQIQGEAG FTFPDLYSST 300 GFYSFEEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 52 | 208 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 52 | 208 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 52 | 208 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 52 | 208 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 52 | 208 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 52 | 208 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 52 | 208 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 52 | 208 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 52 | 208 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 52 | 208 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 52 | 208 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 52 | 208 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 52 | 208 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 52 | 208 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071688.1 | 1e-118 | NAC domain-containing protein 79 | ||||
Refseq | XP_011071689.1 | 1e-118 | NAC domain-containing protein 79 | ||||
Refseq | XP_020547905.1 | 1e-118 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 1e-101 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A3Q7FU25 | 1e-110 | A0A3Q7FU25_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g115850.2.1 | 1e-110 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 1e-104 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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