PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002684-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 756aa    MW: 83453.8 Da    PI: 6.6302
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002684-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2099154156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            r+k +++t+ q++e+e+lF+++++p++++r eL+k+lgL  rqVk+WFqNrR++ k
  SMil_00002684-RA_Salv  99 RKKYHRHTPRQIREMEALFKESPHPDEKQRLELSKQLGLHPRQVKFWFQNRRTQIK 154
                            7999************************************************9877 PP
2START191.63.9e-602714954205
                            HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                  START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                             +aa+el k+a+ +ep+W +s+    +++n+de+++ f  ++          +s+ea+r++++v+ +l+ lv++++d + qW+e ++ 
  SMil_00002684-RA_Salv 271 SRAADELRKMASHGEPLWIRSYetgrDILNYDEYRKDFCAAEDhnstqprkkSSVEASRETALVFVDLPWLVQTFMDAN-QWKELFPc 357
                            57999********************************9665557799********************************.******** PP

                            ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS
                  START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155
                               ka+t++vi++g      ga +lm+ae q+l+plv+ R+++fvRy++q +a +w+i+dvSvd  ++++ + s  R++++pSg++ie
  SMil_00002684-RA_Salv 358 lisKAATVDVICNGegpngdGAAHLMFAEIQMLTPLVAtREVYFVRYSKQISANQWAIADVSVDGGEDRT-DTSPHRCRKRPSGCIIE 444
                            **********************************************************************.8999************* PP

                            EECTCEEEE.EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                  START 156 pksnghskv.twvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                            +ksngh+kv twvehv+++ +++h+l+r +v+sgl +gak+w++tlq+qc 
  SMil_00002684-RA_Salv 445 DKSNGHCKVvTWVEHVECQRSTVHSLYRTIVNSGLGFGAKHWLSTLQQQCD 495
                            ********648***************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-2384150IPR009057Homeodomain-like
SuperFamilySSF466891.17E-2089157IPR009057Homeodomain-like
PROSITE profilePS5007117.78396156IPR001356Homeobox domain
SMARTSM003898.8E-1998160IPR001356Homeobox domain
PfamPF000465.8E-1899154IPR001356Homeobox domain
CDDcd000862.00E-16103154No hitNo description
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084836.316259499IPR002913START domain
SuperFamilySSF559611.32E-30262496No hitNo description
CDDcd088756.99E-100263494No hitNo description
SMARTSM002341.4E-54268496IPR002913START domain
PfamPF018525.5E-47272495IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-4312494IPR023393START-like domain
SuperFamilySSF559613.98E-12526719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
LANAMSVDMS SNLPPSQPRD LFASAPALSL SLAGIFQGGG GEVEEGEGGI GGDAVEISSE  60
NSGAGKSRSD DDYELAAEGL MDDEDEDEND GGGGKKRKRK KYHRHTPRQI REMEALFKES  120
PHPDEKQRLE LSKQLGLHPR QVKFWFQNRR TQIKAIQERH ENSLLKSEID KLRDENKALR  180
ESIKTQSCLN KDAAAAAATT TEGQKLRLEN ARLKAEVEKL KSVIGKHPHA HGTSPRSSSH  240
SSGNDQENRS SFELFAANSG LEKARIMEAV SRAADELRKM ASHGEPLWIR SYETGRDILN  300
YDEYRKDFCA AEDHNSTQPR KKSSVEASRE TALVFVDLPW LVQTFMDANQ WKELFPCLIS  360
KAATVDVICN GEGPNGDGAA HLMFAEIQML TPLVATREVY FVRYSKQISA NQWAIADVSV  420
DGGEDRTDTS PHRCRKRPSG CIIEDKSNGH CKVVTWVEHV ECQRSTVHSL YRTIVNSGLG  480
FGAKHWLSTL QQQCDRLVFL VATNVPVKDS SGVATLAGRK SILKLAQRMS RSFCRALGDS  540
SFNSWNKITS KTGEEIRVAT RKNHNDPGEP LGTILSAVAS VWLPVPHHVL FDFLRDENRR  600
NEWDIMSKGS TVQTIANLAK GQDRGNAVTT MAMQNEEHKM WVLQDSSTNA YESMIIYAPV  660
DIKGMQSVIT GCDSSNIAVL PSGFSILPDG IESRPLVITS RPEEKSAEGG SLLTMAFQIL  720
ISNASATKLS LDSVESVNIL ISCTLQNIKT TLQCED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499KKRKRK
294100KKRKRKK
396100RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072373.10.0homeobox-leucine zipper protein GLABRA 2 isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A4D9B6H20.0A0A4D9B6H2_SALSN; Homeobox-leucine zipper protein
STRINGVIT_09s0002g04340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]