PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002631-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 411aa    MW: 46089.9 Da    PI: 8.2918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002631-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000366179321
                           ETTTTEEESSHHHHHHHHH CS
                zf-C2H2  3 CpdCgksFsrksnLkrHir 21
                           C+ Cgk F ++  L  H++
  SMil_00002631-RA_Salv 61 CKECGKAFQSWKALFGHMK 79
                           ******************7 PP
2zf-C2H212.40.00048303325123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp+C k+F++   L  H r+H
  SMil_00002631-RA_Salv 303 HECPICFKVFPSGQALGGHKRSH 325
                            79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.72E-6333No hitNo description
Gene3DG3DSA:3.30.160.607.8E-4328IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.096628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388633IPR007087Zinc finger, C2H2
PfamPF139126.7E-8629IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003550.0235981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0745986IPR007087Zinc finger, C2H2
SuperFamilySSF576679.88E-96081No hitNo description
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-46182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-76182IPR007087Zinc finger, C2H2
SuperFamilySSF576679.88E-9243270No hitNo description
SMARTSM003550.077248270IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118248275IPR007087Zinc finger, C2H2
PfamPF139124.5E-10248272IPR007087Zinc finger, C2H2
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
SMARTSM003550.074303325IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974303325IPR007087Zinc finger, C2H2
PfamPF139127.3E-12303326IPR007087Zinc finger, C2H2
PROSITE patternPS000280305325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMEKEHICKL CNKSFPCGRS LGGHMRSHLI NTPTPGHPGN DESPPKKKKN DKPSPIPNKA  60
CKECGKAFQS WKALFGHMKC HSANQDSGKP IIMDSQSDNE ATPPPKRKRF DRIITRYNSA  120
SIITNSSSSL TIATTTDDND DEEDYDHNKD HGDDDDEHRE QEEVALSLII LSRDKGSWEP  180
TSKSIGVQCL QKLKKPRVEA KTRKLESLNT EGEVGCDDEV EVNSPKNLNK KSFRKEREGS  240
RERNSRKFRC SMCKKAFQSY QALGGHRASH KKFKGCCAPQ ETEDSQSQLG ENLMMMMKKS  300
KEHECPICFK VFPSGQALGG HKRSHLIVVD QAKSSSPPLS RGFLDLNLPA PAEEEEEGCD  360
DFIKPWWIGA GIGYSPLHDR GNSHISVQIH SFFTANLNAF FLRKTYVING S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.14e-87zinc finger protein ZAT4-like
TrEMBLA0A4D9AL281e-130A0A4D9AL28_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-24C2H2-like zinc finger protein