PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002598-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 116aa    MW: 12641.2 Da    PI: 6.2545
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002598-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.8e-18731061750
                            HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  17 rngilKKAeELSvLCdaevaviifsstgklyeys 50 
                            rng+lKKA+ELSvLCdaeva+++fss g+ly y+
  SMil_00002598-RA_Salv  73 RNGLLKKAYELSVLCDAEVALVVFSSCGRLYIYA 106
                            89*****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004049.0E-157186IPR002100Transcription factor, MADS-box
PfamPF003196.0E-1573104IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.40973109IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-773108IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-1573110IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-1586107IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MAPPNGSTVL LSCLRCGCPI SEGFESMLLC RSWIIARVLL VEFLCKFLVD GFGITSLAAL  60
LIDQAITVLF LVRNGLLKKA YELSVLCDAE VALVVFSSCG RLYIYANNGC INFNLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-17MIKC_MADS family protein