PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002569-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 160aa MW: 17287.3 Da PI: 10.1631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002569-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	72	108	8	49
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 + r+RR+ri ++f L++l+P K++ +++Le+A++ SMil_00002569-RA_Salv 72 AARQRRHRISDRFKILQSLVPGG-----SKMDTVSMLEQAIH 108 569****************95.....5*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.462	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-9	69	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.12E-10	70	109	No hit	No description
SMART	SM00353	2.9E-6	70	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-8	70	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-5	73	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MSSATQAQSR APDAAQSRAT EATQSRDPVH VPVGPVTRAR AKTSCGSTSS EKSKKKRGVA 60 AVKLSTDPQS VAARQRRHRI SDRFKILQSL VPGGSKMDTV SMLEQAIHFQ PNNSASALPP 120 LNHQGFDCYA VDRLLPECGQ LPESWFSGQE NWASDASMHS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269\|PubMed:13130077, ECO:0000269\|PubMed:21963665}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257528	0.0	KP257528.1 Salvia miltiorrhiza clone 95 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530494.2	2e-27	transcription factor HEC3
Swissprot	Q7XAQ6	4e-23	LAX1_ORYSJ; Transcription factor LAX PANICLE 1
TrEMBL	A0A0H3Y8Y5	1e-87	A0A0H3Y8Y5_SALMI; Basic helix-loop-helix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	2e-22	APRATAXIN-like

Publications ? help Back to Top
Kaur P, et al. Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates. Funct. Integr. Genomics, 2008. 8(4): p. 375-86 [PMID:18543009] Oikawa T,Kyozuka J Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice. Plant Cell, 2009. 21(4): p. 1095-108 [PMID:19346465] Woods DP,Hope CL,Malcomber ST Phylogenomic analyses of the BARREN STALK1/LAX PANICLE1 (BA1/LAX1) genes and evidence for their roles during axillary meristem development. Mol. Biol. Evol., 2011. 28(7): p. 2147-59 [PMID:21297156] Tabuchi H, et al. LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems. Plant Cell, 2011. 23(9): p. 3276-87 [PMID:21963665] Gao ZY, et al. Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14492-7 [PMID:23940322] Deshpande GM,Ramakrishna K,Chongloi GL,Vijayraghavan U Functions for rice RFL in vegetative axillary meristem specification and outgrowth. J. Exp. Bot., 2015. 66(9): p. 2773-84 [PMID:25788736] Sekhar S, et al. Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars. J. Plant Physiol., 2015. 179: p. 21-34 [PMID:25817414] Mohanta TK,Mohanta N,Parida P,Bae H Mitogen Activated Protein Kinase (MPK) Interacts With Auxin Influx Carrier (OsAux/LAX1) Involved in Auxin Signaling in Plant. Biol Proced Online, 2015. 17: p. 13 [PMID:26526688] Sekhar S, et al. Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties. PLoS ONE, 2015. 10(12): p. e0145749 [PMID:26710230] Das K, et al. Comparative proteomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness and ethylene evolution. J. Plant Physiol., 2016. 202: p. 65-74 [PMID:27450495]