PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002559-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 319aa MW: 36103.1 Da PI: 8.6581

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002559-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.6	6e-54	9	135	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+++yL++kv ++++++ +i evd++kvePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgk SMil_00002559-RA_Salv 9 LPPGFRFHPTDEELITHYLCRKVIDSSFSA-IAIGEVDMNKVEPWELPWRAKLGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGK 95 79***********************999.88***********888999****************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ ++ lvg+kktLvfy+grapkgek++Wv heyrle SMil_00002559-RA_Salv 96 DKEIFR-GKILVGMKKTLVFYRGRAPKGEKSNWVCHEYRLE 135 **.99****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-60	6	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.704	9	156	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MKRDELMELP PGFRFHPTDE ELITHYLCRK VIDSSFSAIA IGEVDMNKVE PWELPWRAKL 60 GEKEWYFFCV RDKKYPTGLR TNRATAAGYW KATGKDKEIF RGKILVGMKK TLVFYRGRAP 120 KGEKSNWVCH EYRLEGKFSQ DKAAKNDWVI SRVFQKTSGG KKVHISGLVR MGSAAAALPP 180 LMDPSPYHNG EPESGHVHCF SNTDPIKIQE NFMNASFPIP PSSSDSFSPA FPWGNGVGFQ 240 YPASVPLQDP AILRQFLASY GHNMSYGFKN KKEIVSMSQE TVLSTDNSSV VSNLETGKRP 300 FQEQENAVEP QDLDCIWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-55	7	162	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-55	7	162	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-55	7	162	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-55	7	162	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	7	162	18	174	NAC domain-containing protein 19
3swm_B	1e-54	7	162	18	174	NAC domain-containing protein 19
3swm_C	1e-54	7	162	18	174	NAC domain-containing protein 19
3swm_D	1e-54	7	162	18	174	NAC domain-containing protein 19
3swp_A	1e-54	7	162	18	174	NAC domain-containing protein 19
3swp_B	1e-54	7	162	18	174	NAC domain-containing protein 19
3swp_C	1e-54	7	162	18	174	NAC domain-containing protein 19
3swp_D	1e-54	7	162	18	174	NAC domain-containing protein 19
4dul_A	9e-55	7	162	15	171	NAC domain-containing protein 19
4dul_B	9e-55	7	162	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071688.1	1e-161	NAC domain-containing protein 79
Refseq	XP_011071689.1	1e-161	NAC domain-containing protein 79
Refseq	XP_020547905.1	1e-161	NAC domain-containing protein 79
Swissprot	Q9FLJ2	1e-116	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2Z7BJ03	1e-139	A0A2Z7BJ03_9LAMI; Uncharacterized protein
STRING	EOY21905	1e-137	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-115	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]