PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002318-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ZF-HD
Protein Properties Length: 263aa    MW: 29626.9 Da    PI: 6.2679
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002318-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.54.9e-314094358
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                           k rYkeClkNhA+ +GghavDGCgEf+++ ge+gt ++l+CaAC CHRnFHR+e e
  SMil_00002318-RA_Salv 40 KSRYKECLKNHAVGIGGHAVDGCGEFIAA-GEDGTLESLRCAACSCHRNFHRKEAE 94
                           679*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-223294IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-284193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.6E-294292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2254392IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.01E-20163232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-31166232IPR009057Homeodomain-like
TIGRFAMsTIGR015653.4E-27173229IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEYEEDQEEE QEGEIPSYDE SLPNSTRAAS PKLNSPPLRK SRYKECLKNH AVGIGGHAVD  60
GCGEFIAAGE DGTLESLRCA ACSCHRNFHR KEAEGGAAFF PFPHQQHQHQ QQLLLAHHGH  120
FGYRTPGGYL HVAAAAQPRA ALLALPSSSG GGASREEADE YNYYSNPSSG SQKKRFRTKF  180
SQEQKEKMLN FAERLGWKIQ KQDEELVQQF CNELGIKRHV LKVWMHNNKH TLGDGELCFL  240
DDPKFIYILA SYCDDDDPIL NFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-241742311875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9726551e-32EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554326.11e-106zinc-finger homeodomain protein 2-like
SwissprotQ6YXH51e-69ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2G9GCD61e-103A0A2G9GCD6_9LAMI; Uncharacterized protein
STRINGMigut.H02314.1.p7e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-58homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]