PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002089-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 922aa    MW: 103292 Da    PI: 8.6542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002089-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017832854323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            Cp   Cgk F ++ +L++H r+H
  SMil_00002089-RA_Salv 832 CPvkGCGKKFFSHKYLVQHRRVH 854
                            9999*****************99 PP
2zf-C2H2130.00031890916123
                            EEET..TTTEEESSHHHHHHHHHH..T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                            y+C+   Cg++F+  s++ rH r+  H
  SMil_00002089-RA_Salv 890 YVCTeaGCGQTFRFVSDFSRHKRKtgH 916
                            99********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035529807829IPR015880Zinc finger, C2H2-like
SMARTSM003550.0045830854IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.33E-6830867No hitNo description
PROSITE profilePS5015712.362830859IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-6831858IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280832854IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-8859884IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741860889IPR007087Zinc finger, C2H2
SMARTSM003550.0014860884IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280862884IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-9870913No hitNo description
Gene3DG3DSA:3.30.160.601.6E-9885913IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.19890916IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074890921IPR007087Zinc finger, C2H2
PROSITE patternPS000280892916IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
LRVAKEAAIR RAAINCPPMV SHFQLLYDLA LSLCSRVPKS IAMEPRSSRL KDRKRGEGEM  60
LIKEQFFQDM IQNNDMLSAL GKGSSIVLLP QNALSYSFRS SMMVGFQSTT KSKLFPSLCS  120
PDLELRSTGL DSHDESTLDR KQGPKQARGS VVNKRTFSSL FGIDIPSPAP HAEQSYSEPK  180
KASQCQQGLF SCVTCGILCF ACVAIVQPME STAQYLMSAD CSILNNLGES DNDPNHIMDA  240
NTNLSLALMH RNTQIGLSAD QLQYVDKGNV GFTSDSKAHN EPSSLGLLAL TYGDSLDSEE  300
EDCEVNLPAE GCGTSKSDDL RNGDASKNTE TKVNCRKEIS DEFDTNNSST IEPNSLTHRF  360
SRHQTEPQLD IPDSLSCKAV GTPRTGLAPR QPTTMPFTSR LDEDSSRLHV FCLQHAMQVQ  420
KRLSQVGGVD VFLVCHPDYP KLESQAKKVA EELNNDYTWN EVPFREATDE DEEIIQRALE  480
SENAIHGNGD WAVKMGLNLF YSANLSRSPL YSKQMHYNSV IYNAFGRSSS TDSSTSESEL  540
EGKGLGRQKK IIVAGKWCGK VWMSNQAHPL LVNKDSQEQE QESAIASWTK PDVKYVRRSE  600
RSSLTAGILS AVRKTSRKKA SNAESCSFVE EKSLEAEKSD KTRGFYCHKK IKRKQESRIL  660
KEENPEAQNE DESSEESQLR HGTKRLKTEN FEDEDDSLEE YPLSKSWKQI KSKQRARQRE  720
KETPEAAKDQ KKSKKEESNS HNVVDEMEGG PSTRLRKRSE KPCKASGARS TKPKPVVKKQ  780
TTKKSPAGSK VPVSSNKGKT RDEEAEHACD MEGCTMSFCS KQELALHKKN ICPVKGCGKK  840
FFSHKYLVQH RRVHMEDRPL KCPWKGCKMT FKWAWARTEH IRVHTGARPY VCTEAGCGQT  900
FRFVSDFSRH KRKTGHAPKK AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-6580592121137Lysine-specific demethylase REF6
6a58_A2e-6580592121137Lysine-specific demethylase REF6
6a59_A2e-6580592121137Lysine-specific demethylase REF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072922.10.0lysine-specific demethylase REF6 isoform X1
TrEMBLA0A4D9ALJ00.0A0A4D9ALJ0_SALSN; Uncharacterized protein
STRINGMigut.I00266.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49882331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-126relative of early flowering 6