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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00002008-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25565.1 Da PI: 9.6141 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.2e-19 | 76 | 124 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g SMil_00002008-RA_Salv 76 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYLLRG 124 8******9.**********955...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.76E-31 | 74 | 134 | No hit | No description |
SMART | SM00380 | 6.3E-35 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.313 | 75 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 75 | 133 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 75 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 76 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-12 | 76 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAKKFPKMEA LVEKEHQFNN NSWGNLPNEV VSRTIMNIQL SEFSKESIDY WLSTTKTQPM 60 KSSARKTTSS QGSKLFRGVR QRHWGKWVAE IRLPRNRTRV WLGTFDTAEE AAFAYDTAAY 120 LLRGDYAHLN FPHLKHKIKA NSLCNNTVAL LEAKLKAVAQ AQKQSRSEEE INAKAAERVG 180 EEVIEMKKSS GESIGINGEG DAVHQLSRVP SLDMDMIWDA LLVSDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 60 | 133 | 1 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091699.1 | 4e-78 | ethylene-responsive transcription factor ERF062 | ||||
Swissprot | Q9SVQ0 | 1e-63 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A4D9C1W4 | 2e-85 | A0A4D9C1W4_SALSN; EREBP-like factor | ||||
STRING | Gorai.011G157500.1 | 2e-71 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-42 | ERF family protein |