PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00002002-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 555aa MW: 62269.3 Da PI: 6.0548 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.4 | 2.4e-23 | 188 | 274 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 k+Yn+YA + GFs+rk+ +ksk +g +++r+++C ++g+ +++++ + ++r+etrtgC+a+++++++++gk++v+++e+ HnHe SMil_00002002-RA_Salv 188 KCYNRYALMEGFSIRKDFVNKSKVTGLVVSRRYTCHRQGYGSSKRDM---NMKPRKETRTGCQAHMTITRQTNGKYRVIHFETRHNHE 272 58***************************************998776...999*********************************** PP FAR1 89 la 90 ++ SMil_00002002-RA_Salv 273 FV 274 97 PP | |||||||
2 | FAR1 | 89.3 | 5.5e-28 | 322 | 411 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFs+rk++ ++sk +g + +r+++C +eg+r+++k+ +k +r+r+etr+gC a+l+++++ dg+++vt++e+ HnHe SMil_00002002-RA_Salv 322 EFYNAYAGRLGFSIRKDYVNRSKVDGAVASRRYTCFREGYRQNDKRG-SKVKRPRKETRVGCMAQLVISRQADGRYRVTHFEERHNHE 408 6*******************************************999.99************************************** PP FAR1 89 lap 91 l+p SMil_00002002-RA_Salv 409 LVP 411 *86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.9E-21 | 189 | 274 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 5.4E-25 | 322 | 411 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 555 aa Download sequence Send to blast |
MDSGLGSGAR DSSEDDIVGV GDPTAVVDAC INQIGEVSSF LYDDEEVFVH EDASLSREAS 60 STEKDGMDVD RESTYSCLNS SSSEEKSFDS DGKHESASQN GCLNNDAECK SPKACISGNN 120 GPDILGEQDD RSPGISSDDQ LGMDADDKQV SIAETPSNAS SGSIKDEAEE YIVPELGVEF 180 ESEEHAYKCY NRYALMEGFS IRKDFVNKSK VTGLVVSRRY TCHRQGYGSS KRDMNMKPRK 240 ETRTGCQAHM TITRQTNGKY RVIHFETRHN HEFVTPFTAH LLPSQKRISF VEAVEAESAA 300 APVPDGVPKL GMGFDSEDHA YEFYNAYAGR LGFSIRKDYV NRSKVDGAVA SRRYTCFREG 360 YRQNDKRGSK VKRPRKETRV GCMAQLVISR QADGRYRVTH FEERHNHELV PACKVRTLRS 420 QRRSLTNQIV ESSASGASDM PPKSVAELLL AGAGVMLDAY SLWENEWLRG VFEEREKWAL 480 PYSKHIFSAD IETAFLSECS ITSLKKYVKH ESHILQFVKH FGRVVNDWRY KELEANYDMG 540 QHVPRLMGDV IMLKQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098802.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011098803.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011098804.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A4D9AK92 | 0.0 | A0A4D9AK92_SALSN; Zinc finger SWIM domain-containing protein 3 | ||||
STRING | Migut.H00048.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06250.1 | 4e-28 | FAR1-related sequence 7 |