PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001908-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 315aa MW: 36183.7 Da PI: 8.2159

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001908-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	173	197	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H SMil_00001908-RA_Salv 173 FYCDLCNKQYKLAMEFEAHLSSydH 197 78*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	1.3E-17	76	121	IPR000467	G-patch domain
PROSITE profile	PS50174	16.836	78	123	IPR000467	G-patch domain
Pfam	PF01585	1.4E-15	79	119	IPR000467	G-patch domain
SuperFamily	SSF57667	2.58E-5	171	202	No hit	No description
Pfam	PF12171	1.8E-5	173	200	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	175	197	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MSFSMILSVG WGLRRMDSRW YSGKQEMHTR RQQKDEAYEA TVLEDLAEDF RLPIGHRVTE 60 NVDLDNVEQA SLDTQLTSSN VGFRLLQKMG WKGKGLGKDE QGIIEPIKSG IRDAKLGLGK 120 QEEDDYFTAE ENIQRRKLDI EVAETEELVK KREVIAEREQ KIQSEVKEIR KVFYCDLCNK 180 QYKLAMEFEA HLSSYDHNHR KRFKQMRDMH GSSSRDDRLK REQQRQEREM AKFKQMADTH 240 KQLQQLQNQE EAGTLPAPPA PSNATAVADQ DQRKVLKFGF SAKGSTAKSS INIAAKNKKP 300 KVAVASVFGN DSDEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092206.1	0.0	G patch domain-containing protein 8 isoform X1
Refseq	XP_011092207.1	0.0	G patch domain-containing protein 8 isoform X1
TrEMBL	A0A4D9BWN7	0.0	A0A4D9BWN7_SALSN; Uncharacterized protein
STRING	Migut.N00974.1.p	1e-178	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8604	14	15