PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001849-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HSF

Protein Properties

Length: 303aa MW: 34871 Da PI: 4.6775

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001849-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	45.7	1.8e-14	23	103	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+ye ++d++++ ++sws+ +nsfvv+d+++f+ ++Lp+ + + gF+kv+ ++ weF+++ F kg SMil_00001849-RA_Salv 23 FLSKTYEFVDDPHTDPIVSWSRGNNSFVVWDPQNFSINLLPRGYA------------LQGFRKVDPDK---------WEFANEGFLKG 89 9**************************************9886............459*999.........******* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +++ll++ikr+k++ SMil_00001849-RA_Salv 90 QRHLLKNIKRRKQT 103 *********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.7E-17	19	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-19	19	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.2E-34	19	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.9E-11	23	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MYSDAMEIPQ PNEALHENAP PPFLSKTYEF VDDPHTDPIV SWSRGNNSFV VWDPQNFSIN 60 LLPRGYALQG FRKVDPDKWE FANEGFLKGQ RHLLKNIKRR KQTGTTNIAQ GATNCQGFES 120 CVEVGSFGLD GEIERLKRDK SVLMMELVKL RQQQQQTSSH IREMEVRLKG HEAKQQQTMS 180 FLARAIRSPA FLQQMAQQKG KMKEIEAAIG KKKIKRINAA HDEDEDVKVE PREFGEFDDL 240 ELETLAMSSS SMDMEEQMLH RDDYDHDHDH DNVDEKPFDE GFWGDLINGA LEDEIDNFVL 300 DDP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	99	LKNIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552814.1	1e-118	heat stress transcription factor A-2c
Swissprot	Q9LUH8	2e-82	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A4D8YYT5	1e-123	A0A4D8YYT5_SALSN; Heat shock transcription factor, other eukaryote
STRING	XP_009797496.1	1e-100	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	9e-77	heat shock transcription factor A6B