PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001780-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 174aa    MW: 18991 Da    PI: 5.4781
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001780-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.1e-1586147162
                            XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                            +ke kr +r+ +NR++A+  R+RKka++  Le +vkeLe++N +L ++l++l++e + l+++
  SMil_00001780-RA_Salv  86 DKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQNENQMLRQD 147
                            5899*****************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-1286150IPR004827Basic-leucine zipper domain
PfamPF001707.2E-1487147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.20888146IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-1690146No hitNo description
SuperFamilySSF579591.06E-1290146No hitNo description
CDDcd147041.90E-1791142No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
LEEMQEQATS SIAASSLPSS SERSSSSALH AEAKEGMESD DEIRRVPEMG AEAAGTTTSG  60
RDGASLAGPA QPSAGGSKRR GRSPADKENK RLKRLLRNRV SAQQARERKK AYLIDLEARV  120
KELETKNAEL EERLSTLQNE NQMLRQDDQL AAGRARVFSI VMVDGEACYR GDEI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069597.11e-77transcription factor HY5
SwissprotQ9SM501e-74HY5_SOLLC; Transcription factor HY5
TrEMBLA0A4D8YDQ01e-78A0A4D8YDQ0_SALSN; Transcription factor HY5
TrEMBLA0A4D8ZV619e-78A0A4D8ZV61_SALSN; Transcription factor HY5
STRINGPGSC0003DMT4000535761e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80372430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.14e-41bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]