PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001747-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 361aa    MW: 40261.4 Da    PI: 6.9901
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001747-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.71.2e-15276301126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +ktelC+ +++tG C+yGd+C+FaHg
  SMil_00001747-RA_Salv 276 FKTELCNKWQQTGACPYGDNCQFAHG 301
                            79***********************8 PP
2zf-CCCH20.58.6e-07314338125
                            --S---SGGGGTS.--TTTTT-SS-S CS
                zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                            ykte Cr f+  G  C+yG rC+F H
  SMil_00001747-RA_Salv 314 YKTEVCRMFLT-GvPCPYGHRCHFRH 338
                            9**********.76**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-19270308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-11272307IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-9275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549275303IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-13276301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-12309342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8310341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652313341IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5313340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MFLPFFFPLP SIIVHCEAEL SSLNSYAPRI GTMQREISIS SGISTLPFNG EYDFAPSMYS  60
SIFPPKDSSI LENYLHDGSS NFSSTESENA LAPKLPQFQQ LLNQDLTNRH RMVMSRLRGV  120
TKEAQTLRQE NVNLKMANLD LYNRLNRLLN SSPFRGADAD PGLDNLVDRL LKMGVEDEGT  180
SENEAVAQSP TSVMDSGQGG LGEKRVHLPK SISVRSNGYL KAARAGGSGR DGPKVVKAST  240
ENNGTQETGI LEQEQKVYVK GGEQAVELEV YNQGMFKTEL CNKWQQTGAC PYGDNCQFAH  300
GIAELRPVLR HPRYKTEVCR MFLTGVPCPY GHRCHFRHTL TEEEQLVRAM NSNSLQPMSY  360
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-23276342470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833359.11e-134PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F52e-67C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A4D9BJ471e-179A0A4D9BJ47_SALSN; Butyrate response factor 1
STRINGMigut.L01008.1.p1e-133(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-63C3H family protein