PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001545-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 272aa MW: 30914.8 Da PI: 8.2074 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.1 | 7.3e-31 | 53 | 102 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+ SMil_00001545-RA_Salv 53 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 102 79***********************************************8 PP | |||||||
2 | K-box | 92.6 | 6.9e-31 | 121 | 218 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqee 90 s++ s +ea+++++qqe++kL+++i+n q+ +R++lGe L+ L+l++L++Le+++ek++++iR+kKnell+++ie+lqk+ e e++++ SMil_00001545-RA_Salv 121 SNHGSISEANSQYYQQESSKLRAQINNTQNHNRQMLGEALGALTLRDLKNLESKVEKGISRIRTKKNELLCAEIEYLQKRqEIEQHHN 208 3344499**********************************************************************99835688899 PP K-box 91 nkaLrkklee 100 n++Lr+k++e SMil_00001545-RA_Salv 209 NQCLRAKIAE 218 99*****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.226 | 45 | 105 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-38 | 45 | 104 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.09E-44 | 46 | 122 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-32 | 46 | 119 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 47 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-32 | 47 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-26 | 54 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-32 | 67 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-32 | 82 | 103 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-22 | 128 | 216 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.545 | 131 | 222 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
LELHCATFSI SLSSQTEAII FVVSDNLEME AQSDQSREVS PQRKNGRGKI AIKRIENTTN 60 RQVTFCKRRN GLLKKAYELS VLCDAEVALV VFSTRGRLYE YANNSVKATI ERYKKASSDS 120 SNHGSISEAN SQYYQQESSK LRAQINNTQN HNRQMLGEAL GALTLRDLKN LESKVEKGIS 180 RIRTKKNELL CAEIEYLQKR QEIEQHHNNQ CLRAKIAESA RAHEHMNLMP GGSGGFEFVE 240 QQGYDAPNFL QVMGLQPNED YTKQEEPQLQ LM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-19 | 46 | 117 | 2 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102153.1 | 1e-142 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q40885 | 1e-126 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A4D8Y306 | 1e-152 | A0A4D8Y306_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.M00986.1.p | 1e-138 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-106 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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