PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001545-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 30914.8 Da    PI: 8.2074
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001545-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.3e-3153102150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                            krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  SMil_00001545-RA_Salv  53 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 102
                            79***********************************************8 PP
2K-box92.66.9e-311212184100
                  K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqee 90 
                            s++ s +ea+++++qqe++kL+++i+n q+ +R++lGe L+ L+l++L++Le+++ek++++iR+kKnell+++ie+lqk+ e e++++
  SMil_00001545-RA_Salv 121 SNHGSISEANSQYYQQESSKLRAQINNTQNHNRQMLGEALGALTLRDLKNLESKVEKGISRIRTKKNELLCAEIEYLQKRqEIEQHHN 208
                            3344499**********************************************************************99835688899 PP

                  K-box  91 nkaLrkklee 100
                            n++Lr+k++e
  SMil_00001545-RA_Salv 209 NQCLRAKIAE 218
                            99*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.22645105IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-3845104IPR002100Transcription factor, MADS-box
CDDcd002653.09E-4446122No hitNo description
SuperFamilySSF554553.53E-3246119IPR002100Transcription factor, MADS-box
PROSITE patternPS00350047101IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-324767IPR002100Transcription factor, MADS-box
PfamPF003192.6E-2654101IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-326782IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-3282103IPR002100Transcription factor, MADS-box
PfamPF014862.1E-22128216IPR002487Transcription factor, K-box
PROSITE profilePS5129713.545131222IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
LELHCATFSI SLSSQTEAII FVVSDNLEME AQSDQSREVS PQRKNGRGKI AIKRIENTTN  60
RQVTFCKRRN GLLKKAYELS VLCDAEVALV VFSTRGRLYE YANNSVKATI ERYKKASSDS  120
SNHGSISEAN SQYYQQESSK LRAQINNTQN HNRQMLGEAL GALTLRDLKN LESKVEKGIS  180
RIRTKKNELL CAEIEYLQKR QEIEQHHNNQ CLRAKIAESA RAHEHMNLMP GGSGGFEFVE  240
QQGYDAPNFL QVMGLQPNED YTKQEEPQLQ LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-1946117273Myocyte-specific enhancer factor 2B
1tqe_Q2e-1946117273Myocyte-specific enhancer factor 2B
1tqe_R2e-1946117273Myocyte-specific enhancer factor 2B
1tqe_S2e-1946117273Myocyte-specific enhancer factor 2B
6c9l_A2e-1946117273Myocyte-specific enhancer factor 2B
6c9l_B2e-1946117273Myocyte-specific enhancer factor 2B
6c9l_C2e-1946117273Myocyte-specific enhancer factor 2B
6c9l_D2e-1946117273Myocyte-specific enhancer factor 2B
6c9l_E2e-1946117273Myocyte-specific enhancer factor 2B
6c9l_F2e-1946117273Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102153.11e-142floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ408851e-126AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A4D8Y3061e-152A0A4D8Y306_SALSN; MADS-box transcription factor, plant
STRINGMigut.M00986.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]