PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001392-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8839.34 Da    PI: 10.6886
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001392-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-26959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krie+ks rqvtfskRrng+lKKA+ELSvLCd ++  +i+s +gkly y+s
  SMil_00001392-RA_Salv  9 KRIEDKSSRQVTFSKRRNGLLKKAKELSVLCDLDIGAVIYSCRGKLYPYCS 59
                           79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.212161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-27163IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-35160IPR002100Transcription factor, MADS-box
CDDcd002653.91E-34260No hitNo description
PRINTSPR004042.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MGRRKLEIKR IEDKSSRQVT FSKRRNGLLK KAKELSVLCD LDIGAVIYSC RGKLYPYCST  60
NRDGPRNLIM TARDFTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19163163MEF2C
5f28_B3e-19163163MEF2C
5f28_C3e-19163163MEF2C
5f28_D3e-19163163MEF2C
6byy_A3e-19163163MEF2 CHIMERA
6byy_B3e-19163163MEF2 CHIMERA
6byy_C3e-19163163MEF2 CHIMERA
6byy_D3e-19163163MEF2 CHIMERA
6bz1_A3e-19163163MEF2 CHIMERA
6bz1_B3e-19163163MEF2 CHIMERA
6bz1_C3e-19163163MEF2 CHIMERA
6bz1_D3e-19163163MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022881723.15e-31MADS-box transcription factor 7-like
SwissprotQ407022e-23MADS2_ORYSJ; MADS-box transcription factor 2
SwissprotQ9ATE53e-23FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A4D8YAX92e-31A0A4D8YAX9_SALSN; MADS-box transcription factor, plant
STRINGSolyc05g015730.1.19e-27(Solanum lycopersicum)
STRINGXP_009795052.12e-26(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.22e-25MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]