PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001360-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family RAV
Protein Properties Length: 304aa    MW: 33663 Da    PI: 10.3074
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001360-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-104391155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           s++kGV   + +g W A+I+       + +r++lg+f ++++Aa a++ a+ kl++
  SMil_00001360-RA_Salv 43 SRFKGVVSQP-NGHWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAMKLRN 91
                           789***8888.8******999......44**********99*************97 PP
2B386.42.4e-27140240190
                            EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                            f+k+ltpsdv+k++rlv+pkkfa ++           gg +  +++l + d+s rsW+++++y+k+s+++v+t+GW++F+k++gL+++
  SMil_00001360-RA_Salv 140 FEKELTPSDVSKLNRLVIPKKFAVKYfprishatggkGGGSVDDIELLFFDRSMRSWNFRYCYWKSSQSFVFTRGWNRFAKEKGLRSK 227
                            99*******************************999955567999******************************************* PP

                            -EEEEEE-SSSEE CS
                     B3  78 DfvvFkldgrsef 90 
                            D v+F+  ++s++
  SMil_00001360-RA_Salv 228 DRVIFSSYESSGQ 240
                            *****93333444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-64391IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-1543100IPR016177DNA-binding domain
CDDcd000181.07E-1943101No hitNo description
SMARTSM003809.1E-1944105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-164499IPR001471AP2/ERF domain
PROSITE profilePS5103216.7924499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-32136249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-27139247IPR015300DNA-binding pseudobarrel domain
CDDcd100177.37E-24139245No hitNo description
PROSITE profilePS5086312.858140248IPR003340B3 DNA binding domain
PfamPF023623.8E-24140241IPR003340B3 DNA binding domain
SMARTSM010195.4E-20140248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMEEASGATK NLWGEISDSS SSSHHQIPTR HQTSTAGAGA PASRFKGVVS QPNGHWGAQI  60
YANHQRIWLG TFKSEKDAAM AYDSAAMKLR NGLTSRNFPW TDATTARTPP NSPTTRGIKT  120
GTAPGDGLAR RTATRLRVLF EKELTPSDVS KLNRLVIPKK FAVKYFPRIS HATGGKGGGS  180
VDDIELLFFD RSMRSWNFRY CYWKSSQSFV FTRGWNRFAK EKGLRSKDRV IFSSYESSGQ  240
KFCILDVAYD DINGGRGGPA DEASKMKMKP EDEIERMDGE SVEVKENVAS PSCKGLKLFG  300
VRIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2613924413112DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083994.12e-95AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083995.12e-95AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083998.12e-95AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083999.12e-95AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550901.12e-95AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550902.12e-95AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550903.12e-95AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550904.12e-95AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P53e-69RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A4D9AF121e-122A0A4D9AF12_SALSN; RAV-like factor
STRINGMigut.K00338.1.p7e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-70RAV family protein