PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001360-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | RAV | ||||||||
Protein Properties | Length: 304aa MW: 33663 Da PI: 10.3074 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.3 | 1.2e-10 | 43 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +g W A+I+ + +r++lg+f ++++Aa a++ a+ kl++ SMil_00001360-RA_Salv 43 SRFKGVVSQP-NGHWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAMKLRN 91 789***8888.8******999......44**********99*************97 PP | |||||||
2 | B3 | 86.4 | 2.4e-27 | 140 | 240 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ltpsdv+k++rlv+pkkfa ++ gg + +++l + d+s rsW+++++y+k+s+++v+t+GW++F+k++gL+++ SMil_00001360-RA_Salv 140 FEKELTPSDVSKLNRLVIPKKFAVKYfprishatggkGGGSVDDIELLFFDRSMRSWNFRYCYWKSSQSFVFTRGWNRFAKEKGLRSK 227 99*******************************999955567999******************************************* PP -EEEEEE-SSSEE CS B3 78 DfvvFkldgrsef 90 D v+F+ ++s++ SMil_00001360-RA_Salv 228 DRVIFSSYESSGQ 240 *****93333444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-6 | 43 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-15 | 43 | 100 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.07E-19 | 43 | 101 | No hit | No description |
SMART | SM00380 | 9.1E-19 | 44 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 44 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.792 | 44 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-32 | 136 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-27 | 139 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.37E-24 | 139 | 245 | No hit | No description |
PROSITE profile | PS50863 | 12.858 | 140 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-24 | 140 | 241 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-20 | 140 | 248 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MMEEASGATK NLWGEISDSS SSSHHQIPTR HQTSTAGAGA PASRFKGVVS QPNGHWGAQI 60 YANHQRIWLG TFKSEKDAAM AYDSAAMKLR NGLTSRNFPW TDATTARTPP NSPTTRGIKT 120 GTAPGDGLAR RTATRLRVLF EKELTPSDVS KLNRLVIPKK FAVKYFPRIS HATGGKGGGS 180 VDDIELLFFD RSMRSWNFRY CYWKSSQSFV FTRGWNRFAK EKGLRSKDRV IFSSYESSGQ 240 KFCILDVAYD DINGGRGGPA DEASKMKMKP EDEIERMDGE SVEVKENVAS PSCKGLKLFG 300 VRIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-26 | 139 | 244 | 13 | 112 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083994.1 | 2e-95 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_011083995.1 | 2e-95 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_011083998.1 | 2e-95 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_011083999.1 | 2e-95 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_020550901.1 | 2e-95 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_020550902.1 | 2e-95 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_020550903.1 | 2e-95 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Refseq | XP_020550904.1 | 2e-95 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Swissprot | Q9C6P5 | 3e-69 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A4D9AF12 | 1e-122 | A0A4D9AF12_SALSN; RAV-like factor | ||||
STRING | Migut.K00338.1.p | 7e-91 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 2e-70 | RAV family protein |