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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001316-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Whirly | ||||||||
Protein Properties | Length: 226aa MW: 25365.6 Da PI: 8.9691 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 209 | 5.2e-65 | 50 | 187 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneG 88 svyk+kaal+v+++ p+f+ ldsg++kl+++G +ll++a+a ++r+ydW++kq+f+ls+te++++++l++ +sceffhdp +++s+eG SMil_00001316-RA_Salv 50 SVYKGKAALTVEPRPPEFSPLDSGAFKLSKEGYVLLQFAPASGVRQYDWSRKQVFSLSVTEIGHIISLGASNSCEFFHDPNKGKSDEG 137 79************************************************************************************** PP Whirly 89 kvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 +vrk+lkvePlpd sG+f+nlsv+n++++++e++++P++kaefavl s + SMil_00001316-RA_Salv 138 RVRKVLKVEPLPDSSGHFFNLSVQNKITNVDEKIYIPITKAEFAVLVSSF 187 **********************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 8.8E-79 | 38 | 210 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 7.85E-76 | 43 | 220 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 4.3E-61 | 51 | 184 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVIHSVCAGR GGGYLTPQDQ NHEQQKFTPY DSRFPSQPGQ FPPRVYVGYS VYKGKAALTV 60 EPRPPEFSPL DSGAFKLSKE GYVLLQFAPA SGVRQYDWSR KQVFSLSVTE IGHIISLGAS 120 NSCEFFHDPN KGKSDEGRVR KVLKVEPLPD SSGHFFNLSV QNKITNVDEK IYIPITKAEF 180 AVLVSSFNFV LPYLLGWHTF ANSIKPEDAN RLNSTNPRSS DFEWTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-112 | 39 | 224 | 32 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-112 | 39 | 224 | 32 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-112 | 39 | 224 | 32 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-112 | 39 | 224 | 32 | 218 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087065.2 | 1e-139 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9LL85 | 1e-113 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A4D8Z9F4 | 1e-138 | A0A4D8Z9F4_SALSN; Uncharacterized protein | ||||
STRING | Migut.L01333.1.p | 1e-135 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7731 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-108 | ssDNA-binding transcriptional regulator |