PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001243-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 284aa    MW: 31723.9 Da    PI: 10.3608
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001243-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.61.6e-222289264
                           HHHHHHHHHC.....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE CS
           HSF_DNA-bind  2 Flkklyeile.....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkk 64
                           F++k+y++le      +  ++++sw+++gn fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+Y+  +
  SMil_00001243-RA_Salv 22 FVSKTYDLLEaeaeeRRGGEKIVSWNSEGNGFVVWSPAEFSELMLPNYFKHNNFSSFIRQLNTYDSIS 89
                           9*********55444447899*******************************************9554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-3418213IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.4E-311893IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-172293IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.2E-2422213IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-56577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-57890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.4E-31181213IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKKKKNIFEG SMRRKMKSPA PFVSKTYDLL EAEAEERRGG EKIVSWNSEG NGFVVWSPAE  60
FSELMLPNYF KHNNFSSFIR QLNTYDSISS NDSPRASFLE ADNDFVGRSS RINVADFEGF  120
GSGGGRGEAA GFGGGGGAVA LLGLRRRGAL LAGRSQLNED RNGCCCCGGG GGQRRGGRVC  180
GQGFKKTSSR RWEFLHEKFQ RGKRHLLLEI SRKKCEPAAF PPYLKAASPD HRRHAQIVRD  240
KLREENHKLA NEKRELEMQI AHFKALQLSL LQCLSNQQQT QLPP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022886334.14e-33heat stress transcription factor B-2a-like isoform X2
TrEMBLA0A4D8YHE59e-41A0A4D8YHE5_SALSN; Heat shock transcription factor, other eukaryote
STRINGEMJ133033e-31(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-20heat shock factor 4