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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001118-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 352aa MW: 38300.2 Da PI: 8.2371 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 170 | 219 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g++v+eIr p++ r r++lg+++tae+Aa+a +aa +l+g SMil_00001118-RA_Salv 170 KYKGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 219 8*****999.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.72E-27 | 169 | 227 | No hit | No description |
PROSITE profile | PS51032 | 21.707 | 170 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 170 | 227 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-29 | 170 | 227 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-34 | 170 | 233 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-10 | 170 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-9 | 171 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-9 | 193 | 209 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MHRLHANASA ASTMLQPPPS TACHRGRSAA SPEIEHRGLL RRTVLAPHRS GVHSRLFSAA 60 THPLPVAGAL LRPRLPPAGV ANRRFSFNFL YLLLVGIFRI GKLEPFSTLL SSHGGALCHG 120 GALCQRSVCV CVCFAREKGE KREKRFGECD SHLLLRRQLR AADAAAAEQK YKGVRKRKWG 180 KYVSEIRLPN SRERIWLGSY DTAEKAARAF DAALFCLRGP SAKLNFPGDP PNISGWQALT 240 PAEIQAVAQH YGNTYSPPTP PPPPRAPELD DGASPSSNSE GAEPADSIDW SFLDVLDSDA 300 AANAGRVSDF GLFHEPVDMY MPPHLPERGG HDEDDDDDGN GGNVASSFLW NF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 170 | 227 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 177 | KGVRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022856083.1 | 4e-77 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A4D8Z4X1 | 1e-101 | A0A4D8Z4X1_SALSN; EREBP-like factor | ||||
STRING | Migut.A00330.1.p | 4e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-41 | ERF family protein |