![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00000866-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 33981.7 Da PI: 5.4402 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +lv ++k G g+W++ ++ g+ R++k+c++rw +yl SMil_00000866-RA_Salv 14 RGKWTAEEDGKLVSYIKANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60.1 | 4.8e-19 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e +v+++k lG++ W++Ia++++ gRt++++k++w+++l SMil_00000866-RA_Salv 67 RGNFTEQEEETIVKLHKTLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.67 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.53E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.552 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-26 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.92E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRSPCCEKT GLNRGKWTAE EDGKLVSYIK ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADVKRGNF TEQEEETIVK LHKTLGNRWS LIASHLPGRT DNEIKNYWNS HLSRTIYRYR 120 FIGEATLTQA DMIKIAPKSR CRDHRRGKNA AQHHVASAQV PAEERNDEGK SDSFSSCDTL 180 STKGSPDALM LSPNDAQEVE EMLGPSTEID ADILMHLNNF PGNEKTNQCH GDGDGFMAYT 240 AASEERDCCG DGGWNSNLDL ASLYECLSPI VSYFNDDVLQ WDRNVAGGEQ GLWNEEDNIL 300 IWS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
![]() |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071652.1 | 1e-103 | transcription factor MYB14 | ||||
TrEMBL | A0A2G9GJ78 | 1e-100 | A0A2G9GJ78_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.N00057.1.p | 1e-95 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49330.1 | 3e-67 | myb domain protein 111 |