PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000740-RA_Salv

Common Name

SPL5

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SBP

Protein Properties

Length: 492aa MW: 53933.4 Da PI: 8.3511

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000740-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	202	279	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC+ dls+akeyhr+h+vC+ hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ SMil_00000740-RA_Salv 202 RCVVEGCNIDLSTAKEYHRKHRVCDSHSKSPKVVVGGLERRFCQQCSRFHNLSEFDEKKRSCRRRLSDHNARRRKPQQ 279 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.5E-34	200	264	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.317	200	277	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-38	201	282	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.7E-31	203	276	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MFQWPSLCCS IYARLIEKLH LMSHYLEMDW NTKWDWESYD AFGPKATENP KKLQLVDWTI 60 IDDGEIDAGS FNLSAGGGNS GASGSDGGHV SSAKSSISAS DSSTKDGQTP PDFRLMAYED 120 FSGNFKITKR EGTKVSGTSP PLEASIGSVE PLIGLKLGKR TYFENSGGAG SHVKSASPVI 180 PTASTSSLKK TKLPGENLPM PRCVVEGCNI DLSTAKEYHR KHRVCDSHSK SPKVVVGGLE 240 RRFCQQCSRF HNLSEFDEKK RSCRRRLSDH NARRRKPQQE AVQYNTRLAS PFYGGRQQMS 300 YLLNNGPLVH SRNMADTTWD SSTCNSKFTL TKGYHPLKST VDGVSSEQMH MAGPKLPHFI 360 NMQSSAAKGF LASKSSVADV SNPGSKGSQY SSHLDAAPEY GRALSLLSSN SWAPCGPESM 420 ALNPIHENDT CVTQPTMHGG VPPLSSSSSS EIWLPGHHHH ARLQPLPANT NFQEIQLFIT 480 PYETDLYSNI IN

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MFQWPSLCCS IYARLIEKLH LMSHYLEMDW NTKWDWESYD AFGPKATENP KKLQLVDWTI  60
IDDGEIDAGS FNLSAGGGNS GASGSDGGHV SSAKSSISAS DSSTKDGQTP PDFRLMAYED  120
FSGNFKITKR EGTKVSGTSP PLEASIGSVE PLIGLKLGKR TYFENSGGAG SHVKSASPVI  180
PTASTSSLKK TKLPGENLPM PRCVVEGCNI DLSTAKEYHR KHRVCDSHSK SPKVVVGGLE  240
RRFCQQCSRF HNLSEFDEKK RSCRRRLSDH NARRRKPQQE AVQYNTRLAS PFYGGRQQMS  300
YLLNNGPLVH SRNMADTTWD SSTCNSKFTL TKGYHPLKST VDGVSSEQMH MAGPKLPHFI  360
NMQSSAAKGF LASKSSVADV SNPGSKGSQY SSHLDAAPEY GRALSLLSSN SWAPCGPESM  420
ALNPIHENDT CVTQPTMHGG VPPLSSSSSS EIWLPGHHHH ARLQPLPANT NFQEIQLFIT  480
PYETDLYSNI IN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-28	203	276	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	275	KKRSCRRRLSDHNARRRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF437881	0.0	KF437881.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 5 (SPL5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086806.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_011086808.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_020551644.1	0.0	squamosa promoter-binding-like protein 12
TrEMBL	A0A075FJ54	0.0	A0A075FJ54_SALMI; SQUAMOSA promoter binding protein-like 5 (Fragment)
STRING	Migut.K00951.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4129	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	4e-59	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Zhang L, et al. Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza. J Integr Plant Biol, 2014. 56(1): p. 38-50 [PMID:24112769]