PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00000739-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 142aa MW: 15764.7 Da PI: 6.5361 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48 | 1.6e-15 | 9 | 56 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+++s+r++tf+kRr+g++KKAeE + d + ++ifss+ + y + SMil_00000739-RA_Salv 9 LIDDNSKRHTTFTKRRKGLMKKAEEFCRKSDSTAMLLIFSSSKNCYGF 56 69***************************************9988876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.119 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-17 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.34E-21 | 1 | 69 | No hit | No description |
SuperFamily | SSF55455 | 8.5E-20 | 2 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-11 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-14 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-11 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-11 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 142 aa Download sequence Send to blast |
MRRRIEIKLI DDNSKRHTTF TKRRKGLMKK AEEFCRKSDS TAMLLIFSSS KNCYGFGHPE 60 IDYVLDRYEA DSSSAEAGTS AAGAVTEMET RIGDAVESGR WEEAVRGLGF DAFDQLTAEL 120 ENIRRQVAAL QTKFAAEGTG GS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D9A6V5 | 3e-40 | A0A4D9A6V5_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65360.1 | 2e-15 | AGAMOUS-like 23 |