PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000634-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 1751aa MW: 191008 Da PI: 6.0938

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000634-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.3	1e-09	850	891	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE el++d + +G++ +++Ia+ + ++t +c+++++k SMil_00000634-RA_Salv 850 PWTAEERELFIDKLAIFGKN-FAKIASFLE-HKTIADCIEFYYK 891 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.8	7e-10	1065	1105	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I++++ +R+++qck ++ SMil_00000634-RA_Salv 1065 DWTDEEKSFFIQAVSSYGKD-FTMISQCVR-TRSREQCKIFFS 1105 5***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.02E-14	834	896	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-5	842	894	IPR009057	Homeodomain-like
PROSITE profile	PS51293	18.096	846	897	IPR017884	SANT domain
SMART	SM00717	1.9E-10	847	895	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-7	849	891	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	11.285	1061	1112	IPR017884	SANT domain
SMART	SM00717	7.6E-9	1062	1110	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.56E-10	1063	1112	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.9E-6	1065	1106	IPR009057	Homeodomain-like
Pfam	PF00249	4.2E-8	1065	1104	IPR001005	SANT/Myb domain
CDD	cd00167	1.90E-7	1066	1104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1751 aa Download sequence Send to blast
LMPPEQLPWD RRDFRKHERS GSDPRFGGGG FGGGGPHRWR EQNHHPHAPP PHPTPYHHGH 60 SQNHQQQRWY SDFRSSRPIP PGHGKQGGGW HMYPDDAGHG FMPFGSRYGD RNLEDDNFRP 120 FTNRGDGRYF RNSRENRGGS FNQRDWKSTS WEPAASSSAS GPGRPTSEVN TQKSVENTET 180 CHDNNNKSNG SCHPPPDPLP SQSPPPVKEN NEKNEDVADE LASSDQKSEK EENGLGSIDW 240 KPLKWSRSGS LSSRGSGLSH SSSSKSMGVD SEIVVDAQRK NVTPVQSPAA VCVVPAAPAV 300 SDETSSRKKP RLGWGEGLAK YEKKKVGPEE VATKDGLTVS VSDTEVMQLP SVNLLDKSPR 360 VASFSDCTES ATPTSVACSS SPEVGDIMNQ ISAENVHLQL SRIGIEEKES VKAANIDHDT 420 ANRSCSPSAM SHAQYDGPAF NLENLELASI ANLSSLINEL LQSDEPSSAE TGYARTTSMN 480 KLLVWKVNIL KAIEVTESEI DSLETELRSL VANGPHPSDS SFLPGECQLK PCEERLDGSS 540 FTIGPGTLRV DSSGAMNFEN VPAALEDGHV ALKDEEIDSP GSATSKLIEM LPSGEDTFPS 600 EPQHCVEGNK RLEFDNFCSL EKCLEDGSGN QDETCCTDDH KLIETSRCDL ACGGDTHSDI 660 DHIYDSILSS NKNSVNNAME ELNKLLPAQK SFLDLSALLS ASSLPSDPLV IKEKFLKKKR 720 SLKFREKIVT LKFKVFQHFW KEGRVVSIRK LRGKSHKKFD LSHTGFKKYR STNRARISYS 780 GGCPRTVPAE EVIEYTNRLL SESPFKPCRT ALKMPALILD KEIRMSRFIS NNALVEDPCS 840 VEKEKSMINP WTAEERELFI DKLAIFGKNF AKIASFLEHK TIADCIEFYY KNHKSESFER 900 ARKKPDFAKQ KKSQSSTYLV AGGKRWNREV NAASLDMLGE ASIIVASVND GIESQQRSSS 960 RIFFGASSSH KVPRGEDAPL QRSNSLDMYN NETVAADVLA GICGSLSSEA MSSCITSSVD 1020 LIDGYQDRKC QRVGSCVKRP VTPDVTQNID DECSDESCGE MDPTDWTDEE KSFFIQAVSS 1080 YGKDFTMISQ CVRTRSREQC KIFFSKARKC LGLDKIQPGV GNGVSDDGHG GTSDTEGACV 1140 VQTCSVAGND SSECRVGEDL RPPDMKSSDE SDIAGKHILK PDSDGCPGNG GPCPLDSMAV 1200 RDNNPTIDFN ADGEEHDGVN RASGHDSEVT ALAVSSKSDS IGVKKGDNGG QPNKLIEADN 1260 KAAAEVSNGY HGEDVGGQRP IVPEDNLENK KLQDKNASST EVTSVSSAVN ETEPGPEVVR 1320 DIFHPSVDAH SLMQAGSGCQ MEAGSHTCSE KSRPISPEQN GRFALVESST LFSVPIKYQR 1380 HSSTSALSNG GTNGISEKDS NKIVRTVNCQ QQPDPDNFTQ VLRGYPVSVQ TVKEINVDVN 1440 CNKHVPLHNI SKRDDKLHPE RHREFSLQKC GGPKHQAEVQ GPYTSQDKSR DELRPCSGSS 1500 SDVEKPSRNG NVKLFGKILT SSQQKPDSCA EGKGGEDQQN KPVCQTLNLR FRGDHKAANL 1560 DCNNYIGSDN SPRNLGFWDG NRTSTGFAPM PDSAVLLAKY PAAFSNHPMP AVKLDQPTLQ 1620 GVIRSNAHAL NGLSVFPSRE LSSSNGVADY QVIRNRELPP FTLDREQPQD VFSEMQRKNG 1680 FDVVSGLQQQ SRGVVGINVV GRGGILGQCS GVSDPVAAIK MHYAKAQNLG MQAGSGVRED 1740 DAWTSNGDVG K

Sequence ? help Back to Top

Protein Sequence Length: 1751 aa Download sequence Send to blast

LMPPEQLPWD RRDFRKHERS GSDPRFGGGG FGGGGPHRWR EQNHHPHAPP PHPTPYHHGH  60
SQNHQQQRWY SDFRSSRPIP PGHGKQGGGW HMYPDDAGHG FMPFGSRYGD RNLEDDNFRP  120
FTNRGDGRYF RNSRENRGGS FNQRDWKSTS WEPAASSSAS GPGRPTSEVN TQKSVENTET  180
CHDNNNKSNG SCHPPPDPLP SQSPPPVKEN NEKNEDVADE LASSDQKSEK EENGLGSIDW  240
KPLKWSRSGS LSSRGSGLSH SSSSKSMGVD SEIVVDAQRK NVTPVQSPAA VCVVPAAPAV  300
SDETSSRKKP RLGWGEGLAK YEKKKVGPEE VATKDGLTVS VSDTEVMQLP SVNLLDKSPR  360
VASFSDCTES ATPTSVACSS SPEVGDIMNQ ISAENVHLQL SRIGIEEKES VKAANIDHDT  420
ANRSCSPSAM SHAQYDGPAF NLENLELASI ANLSSLINEL LQSDEPSSAE TGYARTTSMN  480
KLLVWKVNIL KAIEVTESEI DSLETELRSL VANGPHPSDS SFLPGECQLK PCEERLDGSS  540
FTIGPGTLRV DSSGAMNFEN VPAALEDGHV ALKDEEIDSP GSATSKLIEM LPSGEDTFPS  600
EPQHCVEGNK RLEFDNFCSL EKCLEDGSGN QDETCCTDDH KLIETSRCDL ACGGDTHSDI  660
DHIYDSILSS NKNSVNNAME ELNKLLPAQK SFLDLSALLS ASSLPSDPLV IKEKFLKKKR  720
SLKFREKIVT LKFKVFQHFW KEGRVVSIRK LRGKSHKKFD LSHTGFKKYR STNRARISYS  780
GGCPRTVPAE EVIEYTNRLL SESPFKPCRT ALKMPALILD KEIRMSRFIS NNALVEDPCS  840
VEKEKSMINP WTAEERELFI DKLAIFGKNF AKIASFLEHK TIADCIEFYY KNHKSESFER  900
ARKKPDFAKQ KKSQSSTYLV AGGKRWNREV NAASLDMLGE ASIIVASVND GIESQQRSSS  960
RIFFGASSSH KVPRGEDAPL QRSNSLDMYN NETVAADVLA GICGSLSSEA MSSCITSSVD  1020
LIDGYQDRKC QRVGSCVKRP VTPDVTQNID DECSDESCGE MDPTDWTDEE KSFFIQAVSS  1080
YGKDFTMISQ CVRTRSREQC KIFFSKARKC LGLDKIQPGV GNGVSDDGHG GTSDTEGACV  1140
VQTCSVAGND SSECRVGEDL RPPDMKSSDE SDIAGKHILK PDSDGCPGNG GPCPLDSMAV  1200
RDNNPTIDFN ADGEEHDGVN RASGHDSEVT ALAVSSKSDS IGVKKGDNGG QPNKLIEADN  1260
KAAAEVSNGY HGEDVGGQRP IVPEDNLENK KLQDKNASST EVTSVSSAVN ETEPGPEVVR  1320
DIFHPSVDAH SLMQAGSGCQ MEAGSHTCSE KSRPISPEQN GRFALVESST LFSVPIKYQR  1380
HSSTSALSNG GTNGISEKDS NKIVRTVNCQ QQPDPDNFTQ VLRGYPVSVQ TVKEINVDVN  1440
CNKHVPLHNI SKRDDKLHPE RHREFSLQKC GGPKHQAEVQ GPYTSQDKSR DELRPCSGSS  1500
SDVEKPSRNG NVKLFGKILT SSQQKPDSCA EGKGGEDQQN KPVCQTLNLR FRGDHKAANL  1560
DCNNYIGSDN SPRNLGFWDG NRTSTGFAPM PDSAVLLAKY PAAFSNHPMP AVKLDQPTLQ  1620
GVIRSNAHAL NGLSVFPSRE LSSSNGVADY QVIRNRELPP FTLDREQPQD VFSEMQRKNG  1680
FDVVSGLQQQ SRGVVGINVV GRGGILGQCS GVSDPVAAIK MHYAKAQNLG MQAGSGVRED  1740
DAWTSNGDVG K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-16	814	899	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-16	814	899	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084346.1	0.0	uncharacterized protein LOC105166619
TrEMBL	A0A4D8Z5X4	0.0	A0A4D8Z5X4_SALSN; Uncharacterized protein
STRING	Migut.F01767.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-123	MYB family protein