PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000528-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19438.8 Da PI: 9.6889 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.6 | 2.2e-25 | 16 | 65 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + SMil_00000528-RA_Salv 16 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 65 79*********************************************965 PP | |||||||
2 | K-box | 43.9 | 1e-15 | 90 | 168 | 6 | 83 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 k+++++++ +l++e++ Lk+eie Lq+ +R + G + + ++l+eL+ Le++Le+ + ++Rs K++++ ++i l++k SMil_00000528-RA_Salv 90 PKEKQANEYMELKEEINLLKNEIEILQKGIRYISGGGApGAMTLNELNVLEKHLETWIYQVRSAKMDIMAQEILLLKNK 168 45578899999**********************98775389********************************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.93E-28 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-35 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.296 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.68E-38 | 9 | 82 | No hit | No description |
PRINTS | PR00404 | 1.3E-26 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-22 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-26 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-26 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.5E-15 | 93 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.13 | 98 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
LVIDWGRMAR GKTQMKRIEN PVHRQVTFCK RRAGLLKKAK ELSVLCDAEI GLFIFSAHGK 60 LYELATKGSM KGLIDKYTKY SKEIPADEEP KEKQANEYME LKEEINLLKN EIEILQKGIR 120 YISGGGAPGA MTLNELNVLE KHLETWIYQV RSAKMDIMAQ EILLLKNKVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-18 | 8 | 96 | 1 | 81 | MEF2 CHIMERA |
6byy_B | 1e-18 | 8 | 96 | 1 | 81 | MEF2 CHIMERA |
6byy_C | 1e-18 | 8 | 96 | 1 | 81 | MEF2 CHIMERA |
6byy_D | 1e-18 | 8 | 96 | 1 | 81 | MEF2 CHIMERA |
6bz1_A | 1e-18 | 8 | 96 | 1 | 81 | MEF2 CHIMERA |
6bz1_B | 1e-18 | 8 | 96 | 1 | 81 | MEF2 CHIMERA |
6bz1_C | 1e-18 | 8 | 96 | 1 | 81 | MEF2 CHIMERA |
6bz1_D | 1e-18 | 8 | 96 | 1 | 81 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164021 | 3e-51 | KP164021.1 Pyrus pyrifolia clone PpAGL12-2 AGL12-like MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020555041.1 | 4e-87 | agamous-like MADS-box protein AGL12 isoform X2 | ||||
Swissprot | A2YQK9 | 2e-61 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 2e-61 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A4D8Z141 | 1e-104 | A0A4D8Z141_SALSN; Uncharacterized protein | ||||
STRING | Migut.C01339.1.p | 2e-82 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9810 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-51 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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