PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000528-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 170aa    MW: 19438.8 Da    PI: 9.6889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000528-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.2e-251665150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  SMil_00000528-RA_Salv 16 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 65
                           79*********************************************965 PP
2K-box43.91e-1590168683
                  K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                             k+++++++ +l++e++ Lk+eie Lq+ +R + G +  + ++l+eL+ Le++Le+ + ++Rs K++++ ++i  l++k
  SMil_00000528-RA_Salv  90 PKEKQANEYMELKEEINLLKNEIEILQKGIRYISGGGApGAMTLNELNVLEKHLETWIYQVRSAKMDIMAQEILLLKNK 168
                            45578899999**********************98775389********************************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.93E-28881IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-35867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.296868IPR002100Transcription factor, MADS-box
CDDcd002654.68E-38982No hitNo description
PRINTSPR004041.3E-261030IPR002100Transcription factor, MADS-box
PfamPF003192.0E-221763IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-263045IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-264566IPR002100Transcription factor, MADS-box
PfamPF014869.5E-1593169IPR002487Transcription factor, K-box
PROSITE profilePS5129710.1398170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
LVIDWGRMAR GKTQMKRIEN PVHRQVTFCK RRAGLLKKAK ELSVLCDAEI GLFIFSAHGK  60
LYELATKGSM KGLIDKYTKY SKEIPADEEP KEKQANEYME LKEEINLLKN EIEILQKGIR  120
YISGGGAPGA MTLNELNVLE KHLETWIYQV RSAKMDIMAQ EILLLKNKVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-18896181MEF2 CHIMERA
6byy_B1e-18896181MEF2 CHIMERA
6byy_C1e-18896181MEF2 CHIMERA
6byy_D1e-18896181MEF2 CHIMERA
6bz1_A1e-18896181MEF2 CHIMERA
6bz1_B1e-18896181MEF2 CHIMERA
6bz1_C1e-18896181MEF2 CHIMERA
6bz1_D1e-18896181MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640213e-51KP164021.1 Pyrus pyrifolia clone PpAGL12-2 AGL12-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020555041.14e-87agamous-like MADS-box protein AGL12 isoform X2
SwissprotA2YQK92e-61MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-61MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A4D8Z1411e-104A0A4D8Z141_SALSN; Uncharacterized protein
STRINGMigut.C01339.1.p2e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-51AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]