PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00000512-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 225aa MW: 25460.2 Da PI: 10.1966

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000512-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.1	1.7e-06	79	98	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r nL+ H+ SMil_00000512-RA_Salv 79 FSCHVCKKTFNRYNNLQMHM 98 89*****************9 PP
2	zf-C2H2	11.2	0.0011	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+ k + ++H +++ SMil_00000512-RA_Salv 163 FSCRKCGKCLAVKGDWRTHEKNC 185 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.38E-5	74	101	No hit	No description
PROSITE profile	PS50157	10.118	79	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.3	79	101	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.0E-4	79	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	73	126	158	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	130	163	183	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
LFLKKKNQEM EPFDFFPRKS GEMALQSSQS CDEDDDAAAI SLQIGLPNSG SGGGKKEANS 60 AAKYWIPSAA QIVVGFTHFS CHVCKKTFNR YNNLQMHMWG HGSQFRRGAE SLKGRQPRGI 120 MGIPCYCCEE GCKNNIDEPR AKPLKDFRTL QTHYKRKHGS KRFSCRKCGK CLAVKGDWRT 180 HEKNCGKRWL CVCGSHFKHK RSLKDHVAAF ASPHRPSSPP TFLKH

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074196.1	1e-113	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-94	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A2G9HH99	1e-113	A0A2G9HH99_9LAMI; Uncharacterized protein
STRING	Migut.N02889.1.p	1e-107	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13264	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	6e-97	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]