PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000405-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 61aa    MW: 7079.24 Da    PI: 10.4603
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000405-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.82.5e-32959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien++nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fss+g++yey++
  SMil_00000405-RA_Salv  9 KRIENNTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRVYEYAN 59
                           79***********************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.726161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-30260IPR002100Transcription factor, MADS-box
CDDcd002656.57E-38260No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-33323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSILCD AEVALIVFSS RGRVYEYANN  60
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-22160160Myocyte-specific enhancer factor 2B
1tqe_Q9e-22160160Myocyte-specific enhancer factor 2B
1tqe_R9e-22160160Myocyte-specific enhancer factor 2B
1tqe_S9e-22160160Myocyte-specific enhancer factor 2B
6c9l_A9e-22160160Myocyte-specific enhancer factor 2B
6c9l_B9e-22160160Myocyte-specific enhancer factor 2B
6c9l_C9e-22160160Myocyte-specific enhancer factor 2B
6c9l_D9e-22160160Myocyte-specific enhancer factor 2B
6c9l_E9e-22160160Myocyte-specific enhancer factor 2B
6c9l_F9e-22160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022852794.11e-36agamous-like MADS-box protein AGL11 isoform X2
RefseqXP_022852795.11e-36agamous-like MADS-box protein AGL11 isoform X2
RefseqXP_022852796.11e-36agamous-like MADS-box protein AGL11 isoform X3
SwissprotQ407046e-36MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A124S2B04e-35A0A124S2B0_CYNCS; Transcription factor, MADS-box
STRINGXP_007146364.13e-35(Phaseolus vulgaris)
STRINGMigut.C01334.1.p3e-35(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.25e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]