PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000353-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 261aa    MW: 30127.5 Da    PI: 4.9801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000353-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-111852251055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  SMil_00000353-RA_Salv 185 RRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 225
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-15175241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-14180238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8185225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEIAGFIDEE WESLSQIFSS VENVDLLQHY GEPSFLSQES SNEALFFNID EDHHQPPPLD  60
TNSFDETMII NMLPDHDVIM EEFLRSNRPL DSCQNKRKSE EHQHDKSPKK KPRNQQQKNT  120
KKGKKQVQDK NITEEEINSG GNRQSCSSYS SEDDDSNALI NEKINNSKAR ASRGSATDPQ  180
SLYARRRRER INERLKILQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDNMWMYA  240
PLAYNGMDLG IYDNICPNLR Q
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575120.0KP257512.1 Salvia miltiorrhiza clone 79 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838212.11e-65PREDICTED: transcription factor bHLH139-like
TrEMBLA0A0H3YB480.0A0A0H3YB48_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.N02774.1.p5e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-42bHLH family protein