PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000283-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 221aa    MW: 24598.6 Da    PI: 5.4148
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000283-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.21.1e-2355102249
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                            Cq+e+C+ad+++ak yhrrhkvCe+h+ka+vvl+sgl+qrfCqqCs f
  SMil_00000283-RA_Salv  55 CQAEDCTADMADAKPYHRRHKVCEFHAKAAVVLLSGLRQRFCQQCSSF 102
                            **********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-2347102IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.09352129IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.63E-2254103IPR004333Transcription factor, SBP-box
PfamPF031105.3E-1855102IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
METSKEEGKR ILLVPELDEE GEDDEDTGED SKKKGALTPS KRRVSGAGGS TQRSCQAEDC  60
TADMADAKPY HRRHKVCEFH AKAAVVLLSG LRQRFCQQCS SFPGKDMANH VLLNSYNWEQ  120
GTGGNNEKNL GFTNYQSLMK LKEVVAGVWQ GTMSDGARVR MILNEKRCNE IIWFLEEGKF  180
TESKINEDGL TMSPTPPEDS VCSLSSVNCW ISSHKEPAQF V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2047102358squamosa promoter binding protein-like 4
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378911e-168KF437891.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 15 (SPL15) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-22squamosa promoter binding protein-like 4