PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000233-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 360aa    MW: 40016.2 Da    PI: 8.6699
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000233-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.31.4e-073962225
                           XXXCHHHCHHHHHHHHHHHHHHHH CS
                 bZIP_1  2 kelkrerrkqkNReAArrsRqRKk 25
                           ++ k  rr+++NReAAr+sR+RKk
  SMil_00000233-RA_Salv 39 RDQKTLRRLAQNREAARKSRLRKK 62
                           567899*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.4E-73562No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-797118No hitNo description
PfamPF141445.7E-31159233IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MADTSPRTDT STDADTEDKM FQSNQLQGIG ASDGSDKSRD QKTLRRLAQN REAARKSRLR  60
KKVGLPRFPS FNETAAHPIQ LYSGFPPPPI SHCQLLAYVQ QLESSRMKLT QLEQELQRAR  120
QQGIFISSSG DQSQSIGGNG ALAFDVEYAR WLEEHNKRIN ELRGAVNSHA GDGELRIIVD  180
GIVSHYDDIF RIKGDAAKAD VFHILSGMWK TPAERCFLWL GGFRSSELLK LLINQLEPLT  240
EQQLLAINNL QQSSQQAEDA LSQGMEALQQ SLAETLAGSL GPTGSSGNVA NYMGQMAMAM  300
GKLGTLEGFI RQADNLRQQT LQQMHRILTT RQSARALLAI SDYFSRLRAL SSLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075851.10.0transcription factor TGA2.2
RefseqXP_011075852.10.0transcription factor TGA2.2
RefseqXP_011075853.10.0transcription factor TGA2.2
RefseqXP_011075855.10.0transcription factor TGA2.2
RefseqXP_011075856.10.0transcription factor TGA2.2
RefseqXP_011075857.10.0transcription factor TGA2.2
RefseqXP_020549248.10.0transcription factor TGA2.2
RefseqXP_020549249.10.0transcription factor TGA2.2
RefseqXP_020549250.10.0transcription factor TGA2.2
RefseqXP_020549251.10.0transcription factor TGA2.2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A068UNV80.0A0A068UNV8_COFCA; Uncharacterized protein
STRINGMigut.F00128.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-137TGACG motif-binding factor 6