PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000153-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 348aa    MW: 38855.5 Da    PI: 6.8266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000153-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.7e-08136156526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             C++f++ GtC+ Gd C F+Hg
  SMil_00000153-RA_Salv 136 ACPDFRK-GTCRKGDACEFSHG 156
                            7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-5131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4135158IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6136156IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.409166190IPR000571Zinc finger, CCCH-type
SMARTSM0035618166189IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMLGERSYGG TTVHTPPWPS AADDHSSLAL SPTAVNANGN VDDYSLFFQA DSLKALQRYL  60
PSNSTDVVPE FSFADSDGSD FLPVDAHSCD NFRMFEFKVR KCTRGRSHDW TECPFAHPGE  120
KARRRDPRKY HYSGTACPDF RKGTCRKGDA CEFSHGVFEC WLHPARYRTQ PCKDGVSCKR  180
RVCFFAHAPE QLRVLSPRAD SYDGSASSHS RFPFIASPES PSPPAAESPP MSPTVNEMVA  240
SLRQLQLNKV KSMPSSWLGS CPSPRLKVAP PGYFSVPTTP TRAVARPGLG YFEAWDCEEE  300
PMERVESGRN LRAKMFEKLS KENPLERVDP DPDPNPNPDV DWVSELIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078221.11e-171zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-115C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A4D9BNL50.0A0A4D9BNL5_SALSN; Uncharacterized protein
STRINGMigut.K00565.1.p1e-167(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-107C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]