PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000082-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 580aa    MW: 64234.1 Da    PI: 9.1292
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000082-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.61.2e-3154138187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW++qe+laL+++r++m+ ++r+++lk+plWee+s+km+e gf+rs+k+Ckek+en+ k++k++k+g+ ++   + +t+++fdqlea
  SMil_00000082-RA_Salv  54 RWPRQETLALLRIRSDMDAAFRDSSLKGPLWEEISRKMAELGFQRSAKKCKEKFENVYKYHKRTKDGRASK--SDGKTYRFFDQLEA 138
                            8********************************************************************97..45567*******85 PP
2trihelix102.63.1e-32423508187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r++++ +++++  k+plWee+s +m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  SMil_00000082-RA_Salv 423 RWPKAEVQALINLRTSLDLKYQENGPKGPLWEEISGAMGKMGYNRSSKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPYFHQLDA 508
                            8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004151113IPR001005SANT/Myb domain
CDDcd122031.07E-2653118No hitNo description
PROSITE profilePS500906.89953111IPR017877Myb-like domain
PfamPF138372.3E-2053139No hitNo description
PRINTSPR012172.1E-13149165No hitNo description
PRINTSPR012172.1E-13183195No hitNo description
PRINTSPR012172.1E-13204225No hitNo description
PRINTSPR012172.1E-13356381No hitNo description
PROSITE profilePS500907.561416480IPR017877Myb-like domain
SMARTSM007173.9E-4420482IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-4421479IPR009057Homeodomain-like
PfamPF138375.7E-23422509No hitNo description
CDDcd122033.94E-28422487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MATSASWGAP ETARPRPPQR VHESGGASGG SSEVGGASSS VPPEEIGGGG GGNRWPRQET  60
LALLRIRSDM DAAFRDSSLK GPLWEEISRK MAELGFQRSA KKCKEKFENV YKYHKRTKDG  120
RASKSDGKTY RFFDQLEALE NAPPPPFTPP PPRPLPPSIT AQPMPASAPM PSHITTTVSS  180
TSPTPLSVLP PIQTPNINPI NNSSPFQSPP PQAPPPQFNP AGLRSDSTSS SSTSSDEDIH  240
RRRGKKRKWK DFFQRLMKDV IHKQEDLQKK FLDALERRER DRVAREEAWR LQEMARMSRE  300
HEFLVQERSI AAAKDAAVIA FLQKVTDQNN LQIPIPITTT NIPQSLAAMQ PQPQPPPPPP  360
PQPKNQHPNP NPPPPPPQIQ PPPPPPLQLP ATVPVTPPSK GTEAAKIDNG GGDNSMTSAS  420
SSRWPKAEVQ ALINLRTSLD LKYQENGPKG PLWEEISGAM GKMGYNRSSK RCKEKWENIN  480
KYFKKVKESS KKRPEDSKTC PYFHQLDAIY RERAKNDAAP LYAEPIMARP EQQWPLPPQR  540
NPALPENESE NNDDEDDDDD EDEGGGYEMV ANKLPSSAAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247RRGKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074760.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-143TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2G9GE440.0A0A2G9GE44_9LAMI; Transcription factor GT-2
STRINGXP_009618661.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-48Trihelix family protein