PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Rsa1.0_75077.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 101aa MW: 11312.1 Da PI: 5.5956

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_75077.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	58.4	1.5e-18	1	100	126	217
GRAS 126 paLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp...gEal 202 p+L++a+as+ + pp l++T+v+sp+s+ + ++ee+g++L +fA++ +++++f+++ +++ +++l l++Lr+ + +Eal Rsa1.0_75077.1_g00001.1 1 PTLIDAMASKLNTPPLLKLTVVSSPSSFpplINISYEELGSKLVNFATTRNIEMQFTIIpstYSDGFSSL-LQHLRIYStsyNEAL 85 79***********************999999*********************988666677777.99999888889 PP GRAS 203 aVnlvlqlhrlldes 217 +Vn++++l +++de+ Rsa1.0_75077.1_g00001.1 86 VVNCHMMLRYIPDET 100 *********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.939	1	101	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-16	1	100	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
PTLIDAMASK LNTPPLLKLT VVSSPSSFPP LINISYEELG SKLVNFATTR NIEMQFTIIP 60 STYSDGFSSL LQHLRIYSTS YNEALVVNCH MMLRYIPDET L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_75077.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437964.1	2e-65	PREDICTED: scarecrow-like protein 32
Swissprot	Q9SN22	6e-54	SCL32_ARATH; Scarecrow-like protein 32
TrEMBL	A0A397XZB3	7e-59	A0A397XZB3_BRACM; Uncharacterized protein
STRING	Bra036041.1-P	6e-58	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5445	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	2e-56	GRAS family protein