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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_69205.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 110aa MW: 11895.4 Da PI: 7.5073 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00093 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF + L H +H Rsa1.0_69205.1_g00001.1 81 YQCKTCDKSFHSFQALGGHRTSH 103 9*********9888887777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.35E-6 | 79 | 107 | No hit | No description |
Pfam | PF13912 | 4.3E-12 | 80 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.575 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
AEAMSSVCNE ERSLEAREEG ADEIKFLGAT DEDQDMANCL MLLSKGHKSK GSGDHLSTQK 60 IGFLSDKKPV TPLGLGRDGV YQCKTCDKSF HSFQALGGHR TSHKKPKLGA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_69205.1_g00001.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232522 | 1e-117 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475119.1 | 1e-75 | PREDICTED: zinc finger protein ZAT5-like | ||||
Refseq | XP_018475984.1 | 1e-75 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A3P5ZUB6 | 6e-60 | A0A3P5ZUB6_BRACM; Uncharacterized protein | ||||
STRING | Bo3g002370.1 | 2e-60 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6347 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 6e-55 | C2H2 family protein |