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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_65853.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 80aa MW: 9341.44 Da PI: 4.9343 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.6 | 1.9e-11 | 60 | 79 | 3 | 22 |
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 Dg++WrKYGqK+vkg+++pr Rsa1.0_65853.1_g00001.1 60 DGFRWRKYGQKVVKGNTNPR 79 9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-12 | 43 | 79 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-9 | 50 | 79 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.46 | 53 | 80 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-7 | 60 | 79 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
LEQRSFKSEY GEVEEEDDQP EIKRVKREGE EEGMYAQVSR GVKEPRVVVQ TISDVDVLID 60 GFRWRKYGQK VVKGNTNPRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_65853.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430043 | 5e-97 | KF430043.1 Brassica rapa WRKY transcription factor 25 (WRKY25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018441600.1 | 4e-46 | PREDICTED: probable WRKY transcription factor 25 isoform X1 | ||||
Refseq | XP_018441601.1 | 3e-46 | PREDICTED: probable WRKY transcription factor 25 isoform X2 | ||||
Swissprot | O22921 | 6e-32 | WRK25_ARATH; Probable WRKY transcription factor 25 | ||||
TrEMBL | A0A087FWF3 | 3e-41 | A0A087FWF3_ARAAL; Uncharacterized protein | ||||
STRING | A0A087FWF3 | 5e-42 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11603 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30250.1 | 3e-34 | WRKY DNA-binding protein 25 |
Publications ? help Back to Top | |||
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