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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_65621.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 100aa MW: 11504.8 Da PI: 7.6191 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.6e-06 | 68 | 88 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F+++ L H+ +H Rsa1.0_65621.1_g00001.1 68 CRECGKGFPSSKALCGHMASH 88 99*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.63E-5 | 63 | 92 | No hit | No description |
PROSITE profile | PS50157 | 10.471 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.7E-6 | 67 | 90 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 68 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
THMSNKNTAD SDEDDEHNKL VIDENGGQSS YGLRENPKKN KRFVDQREMM ALKHQQHQHQ 60 HQQRLLCCRE CGKGFPSSKA LCGHMASHSE REKIVMDSQS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_65621.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493480 | 8e-72 | AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610. | |||
GenBank | CP002684 | 8e-72 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T1K7 | 8e-72 | AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437727.1 | 3e-66 | PREDICTED: uncharacterized protein LOC108810094 | ||||
TrEMBL | A0A078G5F7 | 4e-53 | A0A078G5F7_BRANA; BnaC07g12310D protein | ||||
TrEMBL | A0A0D3D6U0 | 4e-53 | A0A0D3D6U0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ETC9 | 4e-53 | A0A3P6ETC9_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g054120.1 | 7e-54 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-40 | C2H2-like zinc finger protein |