PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_62662.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 90aa    MW: 11014.8 Da    PI: 10.9624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_62662.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-053658223
                             EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                             +C+ Cgk F+    L++H +t H
  Rsa1.0_62662.1_g00001.1 36 RCGECGKGFRYEKCLRNHTQTmH 58
                             7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.5523563IPR007087Zinc finger, C2H2
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-43756IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MNHHHYEEIF CYYGLRGSPK RTTTQKSLRI RKRLIRCGEC GKGFRYEKCL RNHTQTMHSL  60
EENKKKKKSE RDLLCIFRSD VQRRKRSKRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16585KKKSERDLLCIFRSDVQRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_62662.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488337.11e-59PREDICTED: uncharacterized protein LOC108858999
TrEMBLM4C9Z78e-32M4C9Z7_BRARP; Uncharacterized protein
STRINGBra001026.1-P1e-32(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-13C2H2 family protein