PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_60070.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 126aa    MW: 13711.2 Da    PI: 6.5958
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_60070.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof28.82.5e-091214161
                   zf-Dof 41 tkGGalrnvPvGggrrknkks 61
                             tkGG+lrnvPvGgg+rk+++ 
  Rsa1.0_60070.1_g00001.1  1 TKGGSLRNVPVGGGCRKSRRP 21
                             89***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-4120IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
TKGGSLRNVP VGGGCRKSRR PKASSSNTKT GLTTNSYSSG GGSPNIDLAL VYANFLNPKP  60
DKPKLQENCE TDFLVEEPAG ALMEPLWSMD IGHGHHHHHH YEHQVEHIVD ECGYNGLPPF  120
PGEELL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_60070.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603941.19e-67PREDICTED: dof zinc finger protein DOF3.5-like
SwissprotQ9SVC55e-61DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A0D3DS582e-65A0A0D3DS58_BRAOL; Uncharacterized protein
STRINGBo8g080660.14e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-58Dof family protein