![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_49772.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 152aa MW: 17363.4 Da PI: 8.9335 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 2 | 24 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C ksF + L H+r+H Rsa1.0_49772.1_g00001.1 2 YKCRFCLKSFVNGRALGGHMRSH 24 9*********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.1E-6 | 1 | 24 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.06E-5 | 1 | 26 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 2 | 24 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 4 | 24 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 152 aa Download sequence Send to blast |
YYKCRFCLKS FVNGRALGGH MRSHVPSFHK FSIQEEEGER ASQLNDETES DVSSSSSMMD 60 QKVANESETE SSSSMKITRK RSKRTRKLET FTTKKSKTSQ LGYKTEPECE PPHSSASDTT 120 RDKDLAFCLM LLSRDKWKNR TSSKEVVEEI ST |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_49772.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590771.1 | 6e-76 | PREDICTED: zinc finger protein ZAT9-like | ||||
Swissprot | Q9M202 | 1e-49 | ZAT9_ARATH; Zinc finger protein ZAT9 | ||||
TrEMBL | A0A0D3CV02 | 1e-74 | A0A0D3CV02_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FVQ5 | 1e-74 | A0A3P6FVQ5_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g077190.1 | 2e-75 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1465 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-37 | C2H2-like zinc finger protein |