PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_42643.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 58aa MW: 6843.65 Da PI: 4.5721 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1e-07 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ Rsa1.0_42643.1_g00001.1 4 KSILCEFFKA-GQCQKGFKCKFSHD 27 6779**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.272 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-5 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-6 | 4 | 28 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-5 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
VDPKSILCEF FKAGQCQKGF KCKFSHDLNI QRKGEKIDIY SDKRDEDGDM EEWDQETL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_42643.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189534 | 3e-51 | AC189534.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001J06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102048.1 | 4e-35 | PREDICTED: zinc finger CCCH domain-containing protein 21 | ||||
Refseq | XP_013593709.1 | 5e-35 | PREDICTED: zinc finger CCCH domain-containing protein 21 | ||||
Refseq | XP_022564145.1 | 5e-37 | zinc finger CCCH domain-containing protein 21-like | ||||
Refseq | XP_022564146.1 | 5e-37 | zinc finger CCCH domain-containing protein 21-like | ||||
Swissprot | Q9SK74 | 1e-34 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A0D3D2C1 | 1e-33 | A0A0D3D2C1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397YIE3 | 1e-33 | A0A397YIE3_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3N6T671 | 1e-33 | A0A3N6T671_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6BGG3 | 6e-34 | A0A3P6BGG3_BRACM; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A3P6EML0 | 1e-33 | A0A3P6EML0_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4F5V3 | 1e-33 | M4F5V3_BRARP; Uncharacterized protein | ||||
STRING | Bra036459.1-P | 2e-34 | (Brassica rapa) | ||||
STRING | Bo7g003780.1 | 2e-34 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM32303 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 5e-37 | C3H family protein |