PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_42167.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 133aa    MW: 14732.7 Da    PI: 9.5057
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_42167.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.4e-1586130347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE++l++ + ++ G+g+Wk I++ + k Rt  q+ s+ qky
  Rsa1.0_42167.1_g00001.1  86 PWTEEEHKLFLLGLEKVGKGNWKGISKNFVKSRTSTQVASHAQKY 130
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1177130IPR009057Homeodomain-like
PROSITE profilePS5129418.21879133IPR017930Myb domain
SuperFamilySSF466893.66E-1781133IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1782133IPR006447Myb domain, plants
SMARTSM007172.6E-1083133IPR001005SANT/Myb domain
CDDcd001677.48E-1086131No hitNo description
PfamPF002494.3E-1286130IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MADGTNTFAC GVSKEIMLFG VRVVLDPMRK SVSLNNLSEY ESTEKTLKIV GEDGDGQDKN  60
KASSCYASAD DAVPVSSNRE RKRGVPWTEE EHKLFLLGLE KVGKGNWKGI SKNFVKSRTS  120
TQVASHAQKY FLR
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_42167.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472432.11e-95PREDICTED: transcription factor MYB1R1-like isoform X1
SwissprotQ2V9B02e-49MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0D3AQK24e-82A0A0D3AQK2_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QXK15e-82A0A3N6QXK1_BRACR; Uncharacterized protein
TrEMBLA0A3P6DR715e-82A0A3P6DR71_BRAOL; Uncharacterized protein
STRINGBo2g082370.17e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.26e-66MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]