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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_39705.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 137aa MW: 14865.7 Da PI: 10.7191 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 34 | 5.8e-11 | 117 | 137 | 1 | 21 |
---SS-EEEEEEE--TT-SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp 21 ++Dgy+WrKYGqK+vkgs++p Rsa1.0_39705.1_g00001.1 117 VNDGYRWRKYGQKSVKGSPYP 137 58*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-10 | 103 | 137 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-8 | 110 | 137 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.483 | 112 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-7 | 118 | 137 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
HDHPKPLGGA AAVPINQDRR SDVLTAVSKE KSSGSSSVQT HQPPKVHGGL HLSVVPMADE 60 VKTAVSPSSR ITTPKDNISP ASKRRKKGGG SIEHIPMERP NSESRNVVHT QTLFDIVNDG 120 YRWRKYGQKS VKGSPYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-17 | 104 | 137 | 1 | 34 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_39705.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593139 | 1e-156 | KM593139.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY29) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491223.1 | 3e-94 | PREDICTED: WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 1e-54 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | A0A3P6AP73 | 4e-76 | A0A3P6AP73_BRAOL; Uncharacterized protein | ||||
STRING | Bra013187.1-P | 8e-74 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7949 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 1e-55 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
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