PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_39481.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GATA | ||||||||
Protein Properties | Length: 107aa MW: 12012.1 Da PI: 7.5562 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 28.4 | 2.3e-09 | 88 | 107 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C++C tt+TplWR+gp g+k Rsa1.0_39481.1_g00001.1 88 CASCDTTSTPLWRNGPKGPK 107 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 10.264 | 82 | 107 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-5 | 82 | 106 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.5E-7 | 83 | 105 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.1E-6 | 88 | 107 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MMEYQTNANF SMFYDQDHPH YDYDDLSSST SVDCTLSLGT PSTRVNEHRR FSSANSNNLS 60 GDFFFHGGSA KTMSYKKSGS EHNLPRRCAS CDTTSTPLWR NGPKGPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_39481.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454800.1 | 2e-74 | PREDICTED: GATA transcription factor 20-like | ||||
Swissprot | Q9ZPX0 | 6e-55 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | A0A078IMK8 | 3e-66 | A0A078IMK8_BRANA; BnaC09g09760D protein | ||||
TrEMBL | A0A0D3E3A5 | 3e-66 | A0A0D3E3A5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g026020.1 | 6e-67 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6159 | 17 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 1e-51 | GATA transcription factor 20 |
Publications ? help Back to Top | |||
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