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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_36663.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 18979.9 Da PI: 8.6728 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.4 | 5.4e-18 | 64 | 153 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ++s++lk + l+l f+ ++g++ +s +++l++e+g +W++ l+ + ++ + GW+ F++ ng+k+gD+++Fkl+g ++ + Rsa1.0_36663.1_g00001.1 64 VTSNSLKIDKLCLGQAFVIANGLDRGCS-EMVLKNEWGGKWSLALRCYESAYPTYVGPGWRTFCQVNGIKAGDSFMFKLVG-NGNK 147 6899999*****************8887.****************66555555999************************9.5666 PP .EEEEE CS B3 92 lvvkvf 97 +v+ ++ Rsa1.0_36663.1_g00001.1 148 PVLLLC 153 777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 7.458 | 1 | 42 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 59 | 155 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-15 | 59 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.2E-16 | 60 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-16 | 64 | 153 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.50E-15 | 66 | 153 | No hit | No description |
SuperFamily | SSF101936 | 1.06E-15 | 67 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MHTFIRPGWR RFCAENKMSH GHYTLKLVQK SGPPVIRLCG QVHNSPKPVS QSSLNPYCCY 60 VGCVTSNSLK IDKLCLGQAF VIANGLDRGC SEMVLKNEWG GKWSLALRCY ESAYPTYVGP 120 GWRTFCQVNG IKAGDSFMFK LVGNGNKPVL LLCTSKTPLE CQEESSCSDT SS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_36663.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB608563 | 2e-92 | AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442036.1 | 6e-99 | PREDICTED: B3 domain-containing protein REM17-like | ||||
Swissprot | Q84WP3 | 1e-48 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | A0A397YJB9 | 1e-89 | A0A397YJB9_BRACM; Uncharacterized protein | ||||
STRING | Bra012445.1-P | 4e-87 | (Brassica rapa) | ||||
STRING | Bo7g054160.1 | 3e-90 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 6e-51 | B3 family protein |
Publications ? help Back to Top | |||
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