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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_35266.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 130aa MW: 14354.7 Da PI: 5.9849 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.2 | 2.4e-11 | 105 | 126 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++ +pr Rsa1.0_35266.1_g00001.1 105 LDDGYRWRKYGQKSVKNNGHPR 126 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-12 | 92 | 127 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-10 | 97 | 128 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.127 | 100 | 130 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0058 | 105 | 130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-8 | 106 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MEGTDNTNSM LTLEEGENNH FSSFDDKQLM MMVPSLMFSG DMGTSSSCSP ASFHMSAQPE 60 NFQGGGGGEA MEMGGLNDHN NKGKGKRSSA LQRIAFHTRS DDDVLDDGYR WRKYGQKSVK 120 NNGHPRYSFT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_35266.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430063 | 0.0 | KF430063.1 Brassica rapa WRKY transcription factor 56 (WRKY56) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455366.1 | 5e-90 | PREDICTED: probable WRKY transcription factor 56 | ||||
Swissprot | Q8VWQ4 | 4e-56 | WRK56_ARATH; Probable WRKY transcription factor 56 | ||||
TrEMBL | A0A0D3E4E9 | 4e-74 | A0A0D3E4E9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E4Z4 | 4e-74 | A0A3P6E4Z4_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g033920.1 | 7e-75 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 2e-58 | WRKY DNA-binding protein 56 |