PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_31226.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 45aa MW: 5079.84 Da PI: 9.2892

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_31226.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1e-09	14	38	1	24
TSSS-HHHHHHHHHHHHHTTTT.-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tW 24 rg+W++eEd +l d+++++G+g +W Rsa1.0_31226.1_g00001.1 14 RGPWSPEEDAKLRDYIEKYGNGgNW 38 89********************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-12	5	39	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-7	8	41	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.589	9	45	IPR017930	Myb domain
Pfam	PF00249	5.0E-8	14	38	IPR001005	SANT/Myb domain
CDD	cd00167	1.11E-4	16	38	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 45 aa Download sequence Send to blast
MGRAPCCDKT KVKRGPWSPE EDAKLRDYIE KYGNGGNWIS LPLKA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269\|PubMed:16461581, ECO:0000269\|PubMed:16473968}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_31226.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269\|PubMed:16461581}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026660	1e-37	AB026660.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T20O7.
GenBank	AJ131517	1e-37	AJ131517.1 Arabidopsis thaliana MYB37 homologue gene and ORF1.
GenBank	AK175507	1e-37	AK175507.1 Arabidopsis thaliana mRNA for myb like transcription factor (MYB37), complete cds, clone: RAFL21-93-G12.
GenBank	AY519628	1e-37	AY519628.1 Arabidopsis thaliana MYB transcription factor (At5g23000) mRNA, complete cds.
GenBank	CP002688	1e-37	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ446976	1e-37	DQ446976.1 Arabidopsis thaliana clone pENTR221-At5g23000 myb family transcription factor (At5g23000) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610440.1	4e-27	PREDICTED: transcription factor RAX1-like
Refseq	XP_013705873.1	4e-27	transcription factor RAX1-like
Swissprot	Q9FG68	2e-25	RAX1_ARATH; Transcription factor RAX1
TrEMBL	A0A0D3ED95	9e-26	A0A0D3ED95_BRAOL; Uncharacterized protein
STRING	Bo9g147050.1	2e-26	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23000.1	7e-28	myb domain protein 37

Publications ? help Back to Top
Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana. Front Plant Sci, 2013. 4: p. 416 [PMID:24204368] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu YT, et al. Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana. Plant Mol. Biol., 2016. 90(3): p. 267-79 [PMID:26646286]