PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_30475.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 196aa MW: 21199.2 Da PI: 9.7346 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 2e-15 | 115 | 196 | 1 | 79 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W++++++ +++s++yvl+ G ++ L++gD+ Rsa1.0_30475.1_g00001.1 115 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLQIQDVRGKEWTFQFRFwpNNNSRMYVLE-GVTTCIQSMMLQAGDT 196 99**************************666678889***************9989999999***9.**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-24 | 112 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-16 | 112 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.71E-20 | 113 | 196 | No hit | No description |
Pfam | PF02362 | 5.4E-13 | 115 | 196 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.4E-7 | 115 | 196 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.982 | 115 | 196 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
SSTPPQPSFN MALATLPYSP SFATPPVDGN KLMAAAAASQ SHIAQCSASS ILQKPSNPVL 60 ATPPGTSKSA QARVGRPPVD GRGKGHLLPR YWPKYTDKEL QQISGNLNLN IVPLFEKTLS 120 ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLQIQDVRGK EWTFQFRFWP NNNSRMYVLE 180 GVTTCIQSMM LQAGDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 5e-71 | 93 | 196 | 1 | 104 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 5e-71 | 93 | 196 | 1 | 104 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 5e-71 | 93 | 196 | 1 | 104 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 5e-71 | 93 | 196 | 1 | 104 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 5e-71 | 93 | 196 | 1 | 104 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 5e-71 | 93 | 196 | 1 | 104 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 4e-71 | 93 | 196 | 2 | 105 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_30475.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353502 | 1e-146 | AK353502.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-G20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018476649.1 | 1e-138 | PREDICTED: B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q8W4L5 | 1e-110 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A3P6AWS3 | 1e-123 | A0A3P6AWS3_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g024640.1 | 1e-124 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18111 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-104 | high-level expression of sugar-inducible gene 2 |