PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_29491.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 147aa MW: 16997.3 Da PI: 10.1309 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.5e-20 | 67 | 120 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t++q++ Le Fe+++++ ++e++A +lgL+ rqV vWFqNrRa++k+ Rsa1.0_29491.1_g00001.1 67 KRKLTDQQVNMLEFSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 120 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 112.2 | 3.4e-36 | 66 | 146 | 2 | 82 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +kr+l+++qv++LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++Le+ Rsa1.0_29491.1_g00001.1 66 RKRKLTDQQVNMLEFSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDTVVLGQCQLES 146 8**************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.9E-17 | 64 | 125 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.18E-18 | 65 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.05 | 66 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.89E-15 | 66 | 122 | No hit | No description |
Pfam | PF00046 | 3.0E-17 | 67 | 120 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-20 | 68 | 128 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 92 | 101 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 101 | 117 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
MDQNVLGTQV YPYTTQTHSQ CIFVNQIDGL SSGEVSKPVK RRRKRRSKGL SATSEDDMTA 60 IGVMLRKRKL TDQQVNMLEF SFENEHKLES GRKEKIAGEL GLDPRQVAVW FQNRRARWKN 120 KKLEEEYAKL KSQHDTVVLG QCQLESQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 39 | 45 | KRRRKRR |
2 | 64 | 69 | LRKRKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_29491.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189225 | 1e-141 | AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433288.1 | 1e-106 | PREDICTED: homeobox-leucine zipper protein ATHB-53 | ||||
Swissprot | Q9LVR0 | 7e-70 | ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53 | ||||
TrEMBL | A0A078JXM2 | 3e-93 | A0A078JXM2_BRANA; BnaA07g37510D protein | ||||
TrEMBL | A0A397YKD1 | 3e-93 | A0A397YKD1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D6I4 | 3e-93 | M4D6I4_BRARP; Uncharacterized protein | ||||
STRING | Bra012093.1-P | 5e-94 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12602 | 17 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66700.1 | 9e-72 | homeobox 53 |
Publications ? help Back to Top | |||
---|---|---|---|
|