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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_27164.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 224aa MW: 24877.8 Da PI: 8.0114 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ +L Hir H Rsa1.0_27164.1_g00001.1 6 HVCKFCNKKFPSGKSLGGHIRIH 28 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-7 | 3 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.55E-7 | 3 | 32 | No hit | No description |
Pfam | PF13912 | 3.5E-6 | 6 | 24 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.427 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MMEKKHVCKF CNKKFPSGKS LGGHIRIHTN EYSVASVRFN ANNPTKQEQQ QLCCRGCGGS 60 NHMDCHCVGE KMVMMDTRSH TETTRSKKVM KQSESFSSSS ISEIDQEHKD TALSLMMMSI 120 DSKGHNLVVN SLAESSSENT SEILETKASS GEQLKTDKVA ADDASSYSSD SDYFMNGPKK 180 SDSDISLEGS LRNTNSFRNG DDLGVKEGRS KYELRKSKRV LPCY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_27164.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437508.1 | 1e-125 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A3P6EXW0 | 1e-100 | A0A3P6EXW0_BRAOL; Uncharacterized protein | ||||
STRING | Bra012452.1-P | 3e-96 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26590.1 | 3e-35 | C2H2-like zinc finger protein |