PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_25971.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 191aa    MW: 20592.4 Da    PI: 10.4542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_25971.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000537193123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+  Fs+   L  H+r+H
  Rsa1.0_25971.1_g00001.1 71 HECSICKAEFSSGQALGGHMRRH 93
                             78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-8121IPR007087Zinc finger, C2H2
SuperFamilySSF576676.09E-7219No hitNo description
SuperFamilySSF576676.09E-76693No hitNo description
Gene3DG3DSA:3.30.160.603.1E-46895IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.1E-137095IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3287198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
TCDKSFHSFQ ALGGHRTSHK KPKLGATILK CNEKKSAVSA VKTVEAARVV GSFLSLQVTS  60
SDGSKKQEKT HECSICKAEF SSGQALGGHM RRHRGLTLNA NANSTIKTAT SSIHHQESIR  120
EKNFMELNGP CGQVAVDGSG TLTRFRRRSP SAGLRLPRGL APEDEPKLVF ASKDQILLFA  180
AASNSLIDCH H
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_25971.1_g00001.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325221e-146AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475119.11e-105PREDICTED: zinc finger protein ZAT5-like
RefseqXP_018475984.11e-105PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D3AZK29e-96A0A0D3AZK2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ACN29e-96A0A3P6ACN2_BRAOL; Uncharacterized protein
STRINGBo3g002370.12e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.13e-77C2H2 family protein